- Research article
- Open Access
Disruption of zebrafish cyclin G-associated kinase (GAK) function impairs the expression of Notch-dependent genes during neurogenesis and causes defects in neuronal development
- Ting Bai†1,
- Jamie L Seebald†1,
- Kyu-Eui Kim1,
- Hong-Mei Ding1,
- Daniel P Szeto1Email author and
- Henry C Chang1Email author
© Bai et al; licensee BioMed Central Ltd. 2010
Received: 25 June 2009
Accepted: 18 January 2010
Published: 18 January 2010
The J-domain-containing protein auxilin, a critical regulator in clathrin-mediated transport, has been implicated in Drosophila Notch signaling. To ask if this role of auxilin is conserved and whether auxilin has additional roles in development, we have investigated the functions of auxilin orthologs in zebrafish.
Like mammals, zebrafish has two distinct auxilin-like molecules, auxilin and cyclin G-associated kinase (GAK), differing in their domain structures and expression patterns. Both zebrafish auxilin and GAK can functionally substitute for the Drosophila auxilin, suggesting that they have overlapping molecular functions. Still, they are not completely redundant, as morpholino-mediated knockdown of the ubiquitously expressed GAK alone can increase the specification of neuronal cells, a known Notch-dependent process, and decrease the expression of Her4, a Notch target gene. Furthermore, inhibition of GAK function caused an elevated level of apoptosis in neural tissues, resulting in severe degeneration of neural structures.
In support of the notion that endocytosis plays important roles in Notch signaling, inhibition of zebrafish GAK function affects embryonic neuronal cell specification and Her4 expression. In addition, our analysis suggests that zebrafish GAK has at least two functions during the development of neural tissues: an early Notch-dependent role in neuronal patterning and a late role in maintaining the survival of neural cells.
The conserved Notch pathway participates in diverse aspects of animal development, and has been implicated in human diseases and cancers [1–3]. Notch encodes a transmembrane receptor, which, upon ligand binding, undergoes proteolytic processing and releases an intracellular fragment capable of acting as a transcription co-regulator. As both Notch and its ligands (also transmembrane proteins) are widely expressed, their activities need to be tightly regulated. One such important regulation appears to be ligand internalization, which plays a critical role in activating Notch receptors [4, 5].
Notch ligand internalization utilizes an ubiquitin-dependent endocytic pathway, as two structurally unrelated E3 ubiquitin ligases, neuralized (neur) and mind bomb (dMib), can append ubiquitin to DSL (Delta, Serrate, Lag2) ligands [6–13]. Epsin/lqf (liquid facets) then recruits the ubiquitinated DSL ligands into clathrin-coated vesicles (CCVs) [14–18]. The scission of these ligand-containing CCVs from the plasma membrane seems critical for Notch activation, as disruption of dynamin function also causes a Notch-like defect [4, 19, 20].
Another relevant factor in Drosophila Notch ligand endocytosis is the J-domain protein auxilin [21, 22]. First identified in mammals, auxilin is known to cooperate with Hsc70 in mediating the disassembly of clathrin triskelia and coat proteins from newly formed CCVs in vitro . The mammalian genomes contain two distinct auxilin-related genes: auxilin and GAK, differing in the presence of an Ark (actin-related kinase) family kinase domain and their tissue distributions [23–25]. GAK contains the Ark domain at the N-terminus and it is ubiquitously expressed. In contrast, auxilin lacks the kinase domain and its expression appears to be neuronal. However, the expression of auxilin in non-neuronal cells has recently been demonstrated . Besides uncoating, several other functions during endocytosis have recently been suggested for auxilin family proteins, including facilitating clathrin exchange during coated-pit formation [27, 28], participating in pit constriction  and preventing precipitous assembly of clathrin cages [26, 30]. Furthermore, GAK has been implicated in clathrin-mediated trafficking from the trans Golgi network (TGN) [25, 31].
While it is unclear which of the aforementioned cellular functions are most relevant under physiological conditions, mutations in the sole Drosophila auxilin ortholog (dAux) clearly disrupt several Notch-dependent processes [21, 22]. One such process is the patterning of neural tissues, in which the cells destined to become neurons send a Notch-mediated signal to prevent neighboring cells from adopting neuronal fate. In the absence of this lateral inhibition, supernumerary neuronal cells are generated, forming the so-called neurogenic phenotype . Consistent with the notion that dAux participates in Notch signaling, excessive neurons were seen in both the embryonic CNS and the larval eye discs of dAux mutants [21, 32]. Mosaic analysis showed that the function of dAux during Notch signaling is required in the signal-sending cells, suggesting that it has a role in ligand internalization [32, 33].
Given the high degree of conservation of the Notch pathway, it seems reasonable to expect an inhibition of auxilin function in other animal systems would cause Notch-like defects. However, as multiple distinct endocytic pathways exist in higher metazoans , it is possible that different endocytic pathways can functionally substitute for one another in Notch ligand endocytosis. Inhibition of auxilin function by RNA interference in C. elegans was shown to disrupt the receptor-mediated uptake of yolk proteins, yet no Notch-related defects were reported . RNAi-mediated reduction of GAK function in mammalian cells appeared to deregulate EGF signaling and promote tumorigenesis . Tissue-specific inactivation of mouse GAK during embryonic development caused severe degenerations in brain, liver, and skin , but it is unclear whether any of these defects were due to a disruption of Notch function. Thus, while it seems clear that auxilin family proteins are important for animal viability, whether their function in Notch ligand endocytosis is evolutionarily conserved requires additional investigations.
We have used zebrafish to further assess the roles of auxilin-dependent endocytosis in animal development. Besides being a versatile model organism, zebrafish is suitable for our purpose because the importance of Notch ligand endocytosis has been demonstrated during embryonic neural patterning . We show that zebrafish, like mammals but unlike Drosophila, contains both auxilin and GAK. Zebrafish auxilin and GAK are interchangeable in their abilities to substitute for dAux during Drosophila Notch signaling, suggesting that they share some cellular functions. However, they have different expression patterns during development, suggesting that these two paralogs are not completely redundant. Morpholino-mediated knockdown of GAK function during embryogenesis caused an increase in the formation of neuronal cells and a decrease in the expression of a Notch target gene, supporting our hypothesis that the role of auxilin family proteins in Notch signaling is conserved. Furthermore, we showed that embryos deficient in GAK function had a higher level of programmed cell death in neural tissues, suggesting that GAK is required for the survival of neuronal cells.
The zebrafish genome contains both GAK and auxilin
To examine the roles of auxilin-related genes during vertebrate development, we first sought to identify auxilin or GAK in zebrafish genome. Database search revealed that, like mammals, the zebrafish genome contains both GAK (zGAK, XP_001919224) and auxilin (zAux, XP_001336673) orthologs, located on chromosome 23 and 6 respectively. This presence of two distinct auxilin-related orthologs appears to be a feature shared by other vertebrates, as the chicken (Gallus gallus, XP_424873 and XP_422527) and pufferfish (Tetraodon nigroviridis, CAG08624 and CAG11595) genomes both contain GAK and auxilin. In contrast, arthropods such as Drosophila (melanogaster and virilis, XP_002058717), honeybee (Apis mellifera, XP_396906) and flour beetle (Tribolium castaneum, XP_967193) have only GAK. C. elegans also has only one auxilin-related gene, but it lacks both the kinase and the PTEN homologous region .
In addition to the similarities in protein sequences, the intron/exon organizations among auxilin family genes are highly conserved. First, the human, mouse, and zebrafish GAK loci all contain an identical number (27) of introns. The zAux locus appears to have lost one intron in the CBM during evolution, as it contains 16 introns while the human and mouse auxilins have 17. Furthermore, in the conserved domains, the positions and the phases (0, 1, or 2 in the codons) of these introns can be precisely aligned. For example, the PTEN homologous regions of zebrafish, mouse, and human GAK and auxilin loci all contain 8 introns (Figure 2B). These introns, although different in nucleotide lengths, are located at the same positions in the coding region with identical phases. This high degree of conservation in intron/exon organization strongly bolsters the notion that GAK and auxilin were derived from a common ancestral gene through gene duplication.
Overexpression of zGAK or zAux causes clathrin aggregations
To ask if zebrafish auxilin family proteins have similar cellular functions as their respective mammalian counterparts, we determined the subcellular localizations of zGAK and zAux. Both zGAK and zAux were tagged with GFP at the N-termini, placed under the control of a CMV promoter in pCS2, and transiently expressed in HeLa cells. These GFP-tagged fusion proteins are functional, as ectopic expression of either GFP-zGAK or GFP-zAux in Drosophila could restore the neurogenic defect and the lethality caused by dAux mutations (see below). To reveal clathrin-positive structures, these cells were also stained with a mouse monoclonal antibody against clathrin heavy chain.
In cells expressing high levels of GFP-zGAK and GFP-zAux, the cytosolic staining and the enrichments near the perinuclear regions could still be seen. However, these cells also contained large GFP-positive aggregates (indicated by solid arrows and arrowheads) that were intensely clathrin-positive. In untransfected cells, clathrin staining had a vesicular appearance throughout the cytosol, but it appeared depleted from these structures in those aggregate-containing cells. We noticed that zGAK seemed more capable of causing these aggregates than zAux, as intense GFP-positive and clathrin-containing structures were readily seen in cells expressing milder levels of GFP-zGAK. It has been shown that endogenous GAK is predominantly cytosolic and shows elevated associations with TGN [24, 25, 31], and over-expression of mammalian auxilin family proteins in HeLa cells can cause the formation of clathrin-containing "granules" [24, 38]. Thus, our results showed that over-expressed zGAK and zAux are localized similarly within the cells. In addition, their localizations are similar to those of their respective mammalian homologs.
zGAK and zAux are functionally interchangeable in rescuing dAux defects
To determine whether there are intrinsic functional differences between zGAK and zAux, we compared their abilities in rescuing the extra photoreceptor defect and the lethality caused by dAux mutations. N-terminally GFP-tagged zGAK and zAux were placed under UAS control, and transgenic flies carrying these constructs were generated. We reasoned that if zGAK and zAux function similarly during clathrin-mediated transport, both should be able to supplant dAux function during neuronal differentiation in Drosophila eye discs and for animal survival.
Deletion of the J-domain from Drosophila auxilin is known to render them non-functional [32, 33]. To ask whether the J-domain is essential for both zAux and zGAK to rescue dAux, UAS-GFP-zGAKDelJ and UAS-GFP-zAuxDelJ were generated. Unlike their full-length counter parts, these J-deletions failed to rescue the extra Elav-positive cell phenotype (Figure 4E & 4F) and the lethality, suggesting that, like dAux, the J-domain is critical for the functions of these auxilin family proteins.
zGAK and zAux are differentially expressed during embryonic development
Inhibiting zGAK function causes neural-specific cell degeneration
To ensure that these phenotypes were caused by the disruption of zGAK, we tested the binding specificity of GAK-MO1. The complimentary target sequence of GAK-MO1 was placed in front of the mCherry reporter gene , and the resulting fusion (GAK-MO1-mCherry) was cloned into pCS2 (Figure 6C). Similarly, the complimentary sequence for GAK-MO1C was placed in front of mCherry and cloned into pCS2 as a control. Using these constructs, GAK-MO1-mCherry and GAK-MO1C-mCherry RNAs were transcribed in vitro and injected along with either GAK-MO1 or GAK-MO1C morpholinos into one-cell stage embryos. Injected embryos at 6 hpf were then analyzed for the protein expression of mCherry. As shown in Figure 6B, GAK-MO1, but not GAK-MO1C, was capable of blocking the translation of GAK-MO1-mCherry. Conversely, GAK-MO1 had no effect on the expression of GAK-MO1C-mCherry. These results demonstrate a high degree of binding specificity and efficacy of GAK-MO1 to its intended target.
To further show that the phenotypes of GAK-MO1 morphants were not due to off-target effects, a second morpholino antisense oligonucleotide (GAK-MO2) was designed to block splicing at a different region of the GAK gene (Figure 1A). RT-PCR analysis showed that injection of GAK-MO2 caused the retention of intron 19, resulting in a premature stop codon in the PTEN domain in the zGAK transcripts (Figure 1A and Additional file 1: Figure S1A). Embryos injected with 6.0ng of GAK-MO2 exhibited the same phenotypes as those observed with GAK-MO1 morphants (90%, n= 85; Additional file 1: Figure S1B and C). Taken together, these results strongly suggest that the developmental defects of GAK-MO1 and GAK-MO2 morphants resulted from the specific inhibition of zGAK function.
Disrupting zGAK function causes excessive neural-specific programmed cell death
Reduction of zGAK disrupts the development of specific brain regions
Fgf8, expressed in the forebrain, the MHB (midbrain-hindbrain boundary) and other mesodermal derivatives that include somites and tailbud, has been shown to regulate forebrain development and establish the segmental identity of the hindbrain . At the 12-somite stage, the expression of fgf8 in GAK morphants appeared to be normal (data not shown). In contrast, GAK morphants at the 18-somite stage exhibited higher levels of fgf8 expression in the MHB, optic stalks and forebrain, suggestive of a requirement for GAK in repressing fgf8 expression in these regions (Figure 9E-H). No alteration in fgf8 expression in the somites and tailbud regions was observed (Figure 9E and 9F), consistent with the notion that zGAK function is required predominantly in neural tissues, but not in non-neural tissues. At the 18-somite stage, shh mRNA was detected in the ventral midbrain, hypothalamus, telencephalon and notochord . In contrast to fgf8, shh expression appeared normal in the GAK morphants at this stage (Figure 9I and 9J).
Reduction of zGAK impairs Notch signaling
Her4, a homolog of Drosophila E(spl) (Enhancer of split) gene, is a known target of the Notch pathway and participates in specification of neuronal cells . In 8-somite stage wild-type embryos, Her4 is expressed in bilateral stripes of cells . Compared to wild type, the level of Her4 expression in GAK morphants appeared lower (Figure 10G and 10H), suggesting that the output of the Notch pathway was reduced at this stage. Similar to HuC, this decrease in Her4 expression was still observed in 10-somite stage GAK morphant embryos (Additional file 2: Figure S2E-H). At 24 hpf, Her4 expression in GAK morphants and control embryos was not significantly different (Figure 10I and 10J), suggesting that either GAK is not required for Notch signaling, or GAK and auxilin are redundant for Notch signaling at this stage. Nevertheless, the alterations in the expression of HuC and Her4 at the 8- and 10-somite stages showed that a reduction of GAK function could impair Notch activity in zebrafish.
Zebrafish, like mammals but not invertebrates, has two distinct auxilin-related genes. Like their mammalian counterparts, zebrafish GAK and auxilin differ in the presence of the N-terminal kinase and their respective expression patterns. zGAK has a kinase domain and is ubiquitously expressed during embryonic development. In contrast, the expression of zAux, the ortholog without the kinase domain, appears predominantly in the neuronal cells. There are other differences between the two at the protein sequence level. For instance, zGAK, but not zAux, contains a sequence of FGDL at the amino acid position 950, which matches perfectly to the consensus ψG[PDE][ψLM] (ψ is an aromatic residue). This motif, conserved in mammalian GAKs, has been shown to mediate interactions with AP1 adaptor in Golgi-lysosomal trafficking . Taken together, these structural differences between GAK and auxilin suggest that their molecular functions may have diverged during evolution. It is notable that inhibiting zGAK function causes an increase in apoptotic cell death in the neuroectodermal tissues, where GAK and auxilin are both expressed. This inability of zAux to compensate for the zGAK knockdown would argue that GAK has a function unique from auxilin. However, we cannot formally exclude the possibility that these neural cells may have a higher demand for the functions of auxilin-related genes. In this scenario, the functions of both genes would be needed to prevent the onset of apoptosis; therefore, inhibiting GAK alone would be sufficient to induce extra neural cell deaths.
Despite the structural differences between GAK and auxilin, it seems clear that these two paralogs have overlapping molecular functions. Both GAK and auxilin are required for receptor-mediated endocytosis in HeLa cells, indicating that they act in the same process . Consistent with this, we showed that the subcellular localizations of zGAK or zAux in HeLa cells were similar, and over-expression of either in HeLa cells could form clathrin-containing aggregates. More importantly, we showed that over-expression of either zGAK or zAux in Drosophila could completely restore the neurogenic defects caused by dAux, and this ability to rescue dAux absolutely requires their respective J-domains. Together, these results suggest that zGAK and zAux are at least partially redundant.
Unlike zGAK or dAux, zAux does not have the N-terminal Ark kinase. Nevertheless, over-expression of zAux in Drosophila could completely restore the defects caused by a strong dAux allele. This is not entirely surprising as we have previous shown that over-expression of dAuxΔK, a dAux with its kinase domain deleted, could rescue the dAux phenotype . In fact, over-expression of a fragment consisting of the CBM and J domains alone appears sufficient to restore the function of dAux in Notch [32, 33]. However, the kinase domain does have a role in GAK's function in Notch as kinase domain-specific disruptions, by either point mutations  or morpholino-induced mis-splicing (MO1, this study), produce Notch-like phenotypes. Still, it does appear that, when expressed at a high level, the kinase activity is not required for the functions of auxilin family proteins.
In Drosophila, auxilin has been shown to participate in Notch signaling by facilitating ligand internalization [21, 22]. Given that mammals and vertebrates have two auxilin-related genes, it is not known if either, neither, or both function in the Notch pathway. The similarities in domain structures and expression patterns suggest that GAK is more likely to have a role in Notch. However, while inactivation of GAK affects the formation of multiple tissues in mouse , it was unclear whether these defects were caused by disrupted Notch signaling. Here we showed that, in GAK morphants, the number of HuC-positive cells appeared increased, a defect analogous to the neurogenic phenotype. Moreover, we showed that, in GAK morphants, the expression of Her4, a known Notch target gene, was reduced. Thus, while it is not yet known whether zGAK participates in ligand internalization, these defects in HuC and Her4 expressions suggest that GAK function is also required for Notch signaling in zebrafish. These results provide the first evidence that the requirement for a GAK-dependent endocytic pathway during Notch signaling is evolutionarily conserved. A requirement of the mindbomb E3 ligase and epsin in Notch has also been demonstrated in flies [7, 11, 12, 15, 16], fish , and mouse [8, 47, 48], which, along with our analysis of zebrafish GAK, suggests that Notch ligand internalization may rely on the same set of endocytic genes.
It has been demonstrated that a conditional removal of GAK function during mouse brain development causes a significant loss of neural tissues , although the mechanism is not known. Likewise, our depletion of GAK function during zebrafish embryonic development results in neural-specific cell degeneration. Using TUNEL staining, we showed that this cell degeneration is caused by increased programmed cell death, suggesting that GAK has a role in preventing the apoptosis of neural cells. Thus, although more HuC-positive cells were present in zGAK-deficient embryos at the 8- and 10-somite stages, fewer HuC-positive cells might be expected at later stages because of cell death. Indeed, this was precisely what we observed, as fewer HuC-positive cells were seen in GAK morphants at 24 hpf. Interestingly, in mindbomb mutant embryos, where Notch ligand endocytosis is impaired, no cell degeneration phenotype was observed (J.S., unpublished data). This, along with our observation that Her4 expression was not significantly reduced at 24 hpf, suggests that the role of GAK in maintaining neural cell survival may be Notch-independent. Taken together, our results suggest that GAK has at least two distinct functions during the development of neural tissues: an early role in the patterning of neuronal cells and a later role in maintaining the survival of neuronal cells. Furthermore, human GAK has recently been implicated as a susceptibility gene in familial Parkinson disease , and the neurodegenerative phenotype observed in GAK morphants certainly supports this conclusion.
It is noteworthy that the phenotypes of the GAK morphants bear a strong resemblance to those of the "spacehead" class zebrafish mutants . These mutants, isolated from a large-scale screen, are characterized by defects including cell degeneration in the eye and the brain regions, thinner yolk tube, and weak blood circulation . As the genes responsible for most of these mutants have not been determined, the phenotypic similarities suggest that zGAK may correspond to one of them. If this is indeed the case, it will provide important clues to understand the functions of these genes in maintaining neuronal cell survival.
Zebrafish, like mammals but not invertebrates, has two distinct auxilin-related genes, auxilin and GAK. These two genes share some molecular functions, but are not completely redundant, as they are differentially expressed during development. Inhibition of GAK function appears to impair Notch signaling during embryonic neural patterning. This, along with the fact that auxilin has been implicated in Drosophila Notch signaling, suggests that the Notch pathway is regulated by a similar set of endocytic factors. In addition, we showed that inhibition of GAK function increases apoptosis in neural tissues, suggesting that GAK has a role in promoting or maintaining the survival of neural cells. As GAK is recently implicated in familial Parkinson disease , our results should provide a useful model for further understanding the cause of this neurodegenerative disease.
Embryos and morpholino oligoneucleotides injections
All animal procedures were reviewed and approved by the Purdue Animal Care and Use Committee (PUCAC #06-111-09). Adult fish and embryos were raised and maintained at 28.5°C in system water. Embryos were obtained by natural spawning of adult AB strain zebrafish. zGAK-specific antisense morpholino oligonucleotides (GAK-MO1, GAK-MO2, GAK-MO1C, and GAK-MO2C) were purchased from Gene Tools (Philomath, Oregon). At the one-cell stage, each embryo was injected with approximately 1 nl volume of morpholino using a Picospritzer III (Parker Hannifin). Embryos were collected at the appropriate stages  and fixed in 4% paraformaldehyde in phosphate-buffered saline (PBS) overnight at 4°C. Fixed embryos were dechorionated, washed 3 times with PBS, and stored in methanol at -20°C.
Flies were raised at 25°C on standard food. Mutant clones of dAux F956X , a strong allele with a nonsense mutation deleting the J-domain, were generated as previously described . For the lethality assay, a trans-heterozygous combination of dAux F956X /dAux L78H was used to avoid potential unrelated lethal mutations in the background. The dAux L78H allele contains a missense mutation in the kinase domain . Immunostaining of eye imaginal discs was performed as previously described . Mouse αElav 9F8A9 (DSHB, Iowa) was used at 1:100.
A 4475 bps-long cDNA containing the entire zGAK ORF in pCCM114 was obtained from OpenBiosystems (ID 2504096). This particular clone has several mutations, including missense mutations at Arg303, Tyr480, Asp614, and a frameshift mutation at Gly1047. All were repaired using the QuickChange site-directed mutagenesis kit (Stratagene) and the resulting cDNA was verified by sequencing. For zAux, an Exelixis EST (ID 3410313, OpenBiosystems) containing a partial zAux ORF (missing the N-terminal 696 bps) in pSPORT1 was obtained. A full-length cDNA clone was constructed using RT-PCR products from zebrafish embryonic mRNA and standard cloning techniques, and verified by sequencing.
To generate pCS2-GFP-zGAK and pCS2-GFP-zAux, the entire zGAK and zAux ORFs were fused in frame to the C-terminus of EGFP, and the resulting fusions were cloned into pCS2 as EcoRI-XhoI fragments. To make zGAKΔJ and zAuxΔJ, codons for His1206 of zGAK and His801 of zAux were changed into stops by site-directed mutagenesis. To express zGAK and zAux in Drosophila, GFP-tagged full-length or J-domain-deleted cDNAs were cloned into pUAST .
For RT-PCR analysis, total RNAs were extracted from embryos using RNeasy Mini Kit (Qiagen) and the RT-PCR reactions were performed using OneStep RT-PCR Kit (Qiagen). Primers GTATGAGGCCCAGGATTTAGGAAG and GTCAGACTCTTCTTTACTGATGGAC were used to examine the splicing at exon 3. Primers GTGCCCAGAAATGCCTCCACTGTC and GCATAACAGGCTGTCGAACCAGGC were used to examine the splicing at exon 19.
HeLa cell manipulation and microscopy
HeLa cells were maintained in DMEM, supplemented with 10% Fetal Bovine Serum under standard conditions. To express GFP-zGAK or GFP-zAux, 70% confluent HeLa cells in each 10cm dish were transfected with a 0.5ml cocktail, which contained 10 μg plasmid DNA, 25 μl of Fugene HD (Roche) and serum-free DMEM. Cells were harvested and processed for immunostaining 48 hours after transfection. Mouse αChc (Affinity BioReagents) was used at 1:500, and fluorescently-conjugated secondary antibodies (Molecular Probes) were used at 1:100. All images were collected using Olympus BX61 equipped with a Spinning Disc Confocal unit and processed with Photoshop (Adobe).
In situ hybridization and TUNEL staining
Whole-mount in situ hybridization was performed using digoxigenin-labeled antisense RNA probes and visualized using anti-digoxigenin Fab fragment conjugated with alkaline phosphatase (Roche) as previously described . Riboprobes were made from DNA templates, which were linearized and transcribed with either SP6 or T7 RNA polymerases. Embryos were processed and hybridized as previously described .
Whole-mount in situ TUNEL (terminal deoxynucleotide transferase-mediated dUTP nick-end labeling) was performed using the AP (alkaline phosphatase) In Situ Cell Death Detection Kit (Roche) as previously described .
We thank Dr. Ajay Chitnis for providing reagents. We are grateful to Dr. Donna Fekete for critical reading of this manuscript. This work was supported by American Heart Association Scientist Development Grant and American Cancer Society Research Scholar Grant to H.C. T.B. is partially funded by a Purdue Research Foundation fellowship.
- Artavanis-Tsakonas S, Matsuno K, Fortini ME: Notch signaling. Science. 1995, 268: 225-32. 10.1126/science.7716513.View ArticlePubMedGoogle Scholar
- Lai EC: Notch signaling: control of cell communication and cell fate. Development. 2004, 131: 965-73. 10.1242/dev.01074.View ArticlePubMedGoogle Scholar
- Greenwald I: LIN-12/Notch signaling: lessons from worms and flies. Genes Dev. 1998, 12: 1751-62. 10.1101/gad.12.12.1751.View ArticlePubMedGoogle Scholar
- Parks AL, Klueg KM, Stout JR, Muskavitch MA: Ligand endocytosis drives receptor dissociation and activation in the Notch pathway. Development. 2000, 127: 1373-85.PubMedGoogle Scholar
- Nichols JT, Miyamoto A, Olsen SL, D'Souza B, Yao C, Weinmaster G: DSL ligand endocytosis physically dissociates Notch1 heterodimers before activating proteolysis can occur. J Cell Biol. 2007, 176: 445-58. 10.1083/jcb.200609014.PubMed CentralView ArticlePubMedGoogle Scholar
- Yeh E, Dermer M, Commisso C, Zhou L, McGlade CJ, Boulianne GL: Neuralized functions as an E3 ubiquitin ligase during Drosophila development. Curr Biol. 2001, 11: 1675-9. 10.1016/S0960-9822(01)00527-9.View ArticlePubMedGoogle Scholar
- Wang W, Struhl G: Distinct roles for Mind bomb, Neuralized and Epsin in mediating DSL endocytosis and signaling in Drosophila. Development. 2005, 132: 2883-94. 10.1242/dev.01860.View ArticlePubMedGoogle Scholar
- Koo BK, Lim HS, Song R, Yoon MJ, Yoon KJ, Moon JS, Kim YW, Kwon MC, Yoo KW, Kong MP, et al: Mind bomb 1 is essential for generating functional Notch ligands to activate Notch. Development. 2005, 132: 3459-70. 10.1242/dev.01922.View ArticlePubMedGoogle Scholar
- Itoh M, Kim CH, Palardy G, Oda T, Jiang YJ, Maust D, Yeo SY, Lorick K, Wright K, Ariza-McNaughton L, et al: Mind bomb is a ubiquitin ligase that is essential for efficient activation of Notch signaling by Delta. Dev Cell. 2003, 4: 67-82. 10.1016/S1534-5807(02)00409-4.View ArticlePubMedGoogle Scholar
- Lai EC, Deblandre GA, Kintner C, Rubin GM: Drosophila neuralized is a ubiquitin ligase that promotes the internalization and degradation of delta. Dev Cell. 2001, 1: 783-94. 10.1016/S1534-5807(01)00092-2.View ArticlePubMedGoogle Scholar
- Lai EC, Roegiers F, Qin X, Jan YN, Rubin GM: The ubiquitin ligase Drosophila Mind bomb promotes Notch signaling by regulating the localization and activity of Serrate and Delta. Development. 2005, 132: 2319-32. 10.1242/dev.01825.View ArticlePubMedGoogle Scholar
- Le Borgne R, Remaud S, Hamel S, Schweisguth F: Two distinct E3 ubiquitin ligases have complementary functions in the regulation of delta and serrate signaling in Drosophila. PLoS Biol. 2005, 3: e96-10.1371/journal.pbio.0030096.PubMed CentralView ArticlePubMedGoogle Scholar
- Pavlopoulos E, Pitsouli C, Klueg KM, Muskavitch MA, Moschonas NK, Delidakis C: neuralized Encodes a peripheral membrane protein involved in delta signaling and endocytosis. Dev Cell. 2001, 1: 807-16. 10.1016/S1534-5807(01)00093-4.View ArticlePubMedGoogle Scholar
- Overstreet E, Chen X, Wendland B, Fischer JA: Either part of a Drosophila epsin protein, divided after the ENTH domain, functions in endocytosis of delta in the developing eye. Curr Biol. 2003, 13: 854-60. 10.1016/S0960-9822(03)00326-9.View ArticlePubMedGoogle Scholar
- Overstreet E, Fitch E, Fischer JA: Fat facets and Liquid facets promote Delta endocytosis and Delta signaling in the signaling cells. Development. 2004, 131: 5355-66. 10.1242/dev.01434.View ArticlePubMedGoogle Scholar
- Wang W, Struhl G: Drosophila Epsin mediates a select endocytic pathway that DSL ligands must enter to activate Notch. Development. 2004, 131: 5367-80. 10.1242/dev.01413.View ArticlePubMedGoogle Scholar
- Polo S, Sigismund S, Faretta M, Guidi M, Capua MR, Bossi G, Chen H, De Camilli P, Di Fiore PP: A single motif responsible for ubiquitin recognition and monoubiquitination in endocytic proteins. Nature. 2002, 416: 451-5. 10.1038/416451a.View ArticlePubMedGoogle Scholar
- Shih SC, Katzmann DJ, Schnell JD, Sutanto M, Emr SD, Hicke L: Epsins and Vps27p/Hrs contain ubiquitin-binding domains that function in receptor endocytosis. Nat Cell Biol. 2002, 4: 389-93. 10.1038/ncb790.View ArticlePubMedGoogle Scholar
- Poodry CA: shibire, a neurogenic mutant of Drosophila. Dev Biol. 1990, 138: 464-72. 10.1016/0012-1606(90)90212-2.View ArticlePubMedGoogle Scholar
- Seugnet L, Simpson P, Haenlin M: Requirement for dynamin during Notch signaling in Drosophila neurogenesis. Dev Biol. 1997, 192: 585-98. 10.1006/dbio.1997.8723.View ArticlePubMedGoogle Scholar
- Hagedorn EJ, Bayraktar JL, Kandachar VR, Bai T, Englert DM, Chang HC: Drosophila melanogaster auxilin regulates the internalization of Delta to control activity of the Notch signaling pathway. J Cell Biol. 2006, 173: 443-52. 10.1083/jcb.200602054.PubMed CentralView ArticlePubMedGoogle Scholar
- Eun SH, Lea K, Overstreet E, Stevens S, Lee JH, Fischer JA: Identification of genes that interact with Drosophila liquid facets. Genetics. 2007, 175: 1163-74. 10.1534/genetics.106.067959.PubMed CentralView ArticlePubMedGoogle Scholar
- Ungewickell E, Ungewickell H, Holstein SE, Lindner R, Prasad K, Barouch W, Martin B, Greene LE, Eisenberg E: Role of auxilin in uncoating clathrin-coated vesicles. Nature. 1995, 378: 632-5. 10.1038/378632a0.View ArticlePubMedGoogle Scholar
- Umeda A, Meyerholz A, Ungewickell E: Identification of the universal cofactor (auxilin 2) in clathrin coat dissociation. Eur J Cell Biol. 2000, 79: 336-42. 10.1078/S0171-9335(04)70037-0.View ArticlePubMedGoogle Scholar
- Zhang CX, Engqvist-Goldstein AE, Carreno S, Owen DJ, Smythe E, Drubin DG: Multiple roles for cyclin G-associated kinase in clathrin-mediated sorting events. Traffic. 2005, 6: 1103-13. 10.1111/j.1600-0854.2005.00346.x.View ArticlePubMedGoogle Scholar
- Hirst J, Sahlender DA, Li S, Lubben NB, Borner GH, Robinson MS: Auxilin depletion causes self-assembly of clathrin into membraneless cages in vivo. Traffic. 2008, 9: 1354-71. 10.1111/j.1600-0854.2008.00764.x.PubMed CentralView ArticlePubMedGoogle Scholar
- Wu X, Zhao X, Puertollano R, Bonifacino JS, Eisenberg E, Greene LE: Adaptor and clathrin exchange at the plasma membrane and trans-Golgi network. Mol Biol Cell. 2003, 14: 516-28. 10.1091/mbc.E02-06-0353.PubMed CentralView ArticlePubMedGoogle Scholar
- Wu X, Zhao X, Baylor L, Kaushal S, Eisenberg E, Greene LE: Clathrin exchange during clathrin-mediated endocytosis. J Cell Biol. 2001, 155: 291-300. 10.1083/jcb.200104085.PubMed CentralView ArticlePubMedGoogle Scholar
- Newmyer SL, Christensen A, Sever S: Auxilin-dynamin interactions link the uncoating ATPase chaperone machinery with vesicle formation. Dev Cell. 2003, 4: 929-40. 10.1016/S1534-5807(03)00157-6.View ArticlePubMedGoogle Scholar
- Jiang R, Gao B, Prasad K, Greene LE, Eisenberg E: Hsc70 chaperones clathrin and primes it to interact with vesicle membranes. J Biol Chem. 2000, 275: 8439-47. 10.1074/jbc.275.12.8439.View ArticlePubMedGoogle Scholar
- Kametaka S, Moriyama K, Burgos PV, Eisenberg E, Greene LE, Mattera R, Bonifacino JS: Canonical interaction of cyclin G associated kinase with adaptor protein 1 regulates lysosomal enzyme sorting. Mol Biol Cell. 2007, 18: 2991-3001. 10.1091/mbc.E06-12-1162.PubMed CentralView ArticlePubMedGoogle Scholar
- Eun SH, Banks SM, Fischer JA: Auxilin is essential for Delta signaling. Development. 2008, 135: 1089-95. 10.1242/dev.009530.View ArticlePubMedGoogle Scholar
- Kandachar V, Bai T, Chang HC: The clathrin-binding motif and the J-domain of Drosophila Auxilin are essential for facilitating Notch ligand endocytosis. BMC Dev Biol. 2008, 8: 50-10.1186/1471-213X-8-50.PubMed CentralView ArticlePubMedGoogle Scholar
- Doherty GJ, McMahon HT: Mechanisms of endocytosis. Annu Rev Biochem. 2009, 78: 857-902. 10.1146/annurev.biochem.78.081307.110540.View ArticlePubMedGoogle Scholar
- Greener T, Grant B, Zhang Y, Wu X, Greene LE, Hirsh D, Eisenberg E: Caenorhabditis elegans auxilin: a J-domain protein essential for clathrin-mediated endocytosis in vivo. Nat Cell Biol. 2001, 3: 215-9. 10.1038/35055137.View ArticlePubMedGoogle Scholar
- Zhang L, Gjoerup O, Roberts TM: The serine/threonine kinase cyclin G-associated kinase regulates epidermal growth factor receptor signaling. Proc Natl Acad Sci USA. 2004, 101: 10296-301. 10.1073/pnas.0403175101.PubMed CentralView ArticlePubMedGoogle Scholar
- Lee DW, Zhao X, Yim YI, Eisenberg E, Greene LE: Essential role of cyclin-G-associated kinase (Auxilin-2) in developing and mature mice. Mol Biol Cell. 2008, 19: 2766-76. 10.1091/mbc.E07-11-1115.PubMed CentralView ArticlePubMedGoogle Scholar
- Zhao X, Greener T, Al-Hasani H, Cushman SW, Eisenberg E, Greene LE: Expression of auxilin or AP180 inhibits endocytosis by mislocalizing clathrin: evidence for formation of nascent pits containing AP1 or AP2 but not clathrin. J Cell Sci. 2001, 114: 353-65.PubMedGoogle Scholar
- Robinow S, White K: The locus elav of Drosophila melanogaster is expressed in neurons at all developmental stages. Dev Biol. 1988, 126: 294-303. 10.1016/0012-1606(88)90139-X.View ArticlePubMedGoogle Scholar
- Shaner NC, Campbell RE, Steinbach PA, Giepmans BN, Palmer AE, Tsien RY: Improved monomeric red, orange and yellow fluorescent proteins derived from Discosoma sp. red fluorescent protein. Nat Biotechnol. 2004, 22: 1567-72. 10.1038/nbt1037.View ArticlePubMedGoogle Scholar
- Oxtoby E, Jowett T: Cloning of the zebrafish krox-20 gene (krx-20) and its expression during hindbrain development. Nucleic Acids Res. 1993, 21: 1087-95. 10.1093/nar/21.5.1087.PubMed CentralView ArticlePubMedGoogle Scholar
- Reifers F, Bohli H, Walsh EC, Crossley PH, Stainier DY, Brand M: Fgf8 is mutated in zebrafish acerebellar (ace) mutants and is required for maintenance of midbrain-hindbrain boundary development and somitogenesis. Development. 1998, 125: 2381-95.PubMedGoogle Scholar
- Krauss S, Concordet JP, Ingham PW: A functionally conserved homolog of the Drosophila segment polarity gene hh is expressed in tissues with polarizing activity in zebrafish embryos. Cell. 1993, 75: 1431-44. 10.1016/0092-8674(93)90628-4.View ArticlePubMedGoogle Scholar
- Kim CH, Ueshima E, Muraoka O, Tanaka H, Yeo SY, Huh TL, Miki N: Zebrafish elav/HuC homologue as a very early neuronal marker. Neurosci Lett. 1996, 216: 109-12. 10.1016/0304-3940(96)13021-4.View ArticlePubMedGoogle Scholar
- Park HC, Hong SK, Kim HS, Kim SH, Yoon EJ, Kim CH, Miki N, Huh TL: Structural comparison of zebrafish Elav/Hu and their differential expressions during neurogenesis. Neurosci Lett. 2000, 279: 81-4. 10.1016/S0304-3940(99)00940-4.View ArticlePubMedGoogle Scholar
- Takke C, Dornseifer P, Weizsacker E v, Campos-Ortega JA: her4, a zebrafish homologue of the Drosophila neurogenic gene E(spl), is a target of NOTCH signalling. Development. 1999, 126: 1811-21.PubMedGoogle Scholar
- Koo BK, Yoon MJ, Yoon KJ, Im SK, Kim YY, Kim CH, Suh PG, Jan YN, Kong YY: An obligatory role of mind bomb-1 in notch signaling of mammalian development. PLoS ONE. 2007, 2: e1221-10.1371/journal.pone.0001221.PubMed CentralView ArticlePubMedGoogle Scholar
- Chen H, Ko G, Zatti A, Di Giacomo G, Liu L, Raiteri E, Perucco E, Collesi C, Min W, Zeiss C, et al: Embryonic arrest at midgestation and disruption of Notch signaling produced by the absence of both epsin 1 and epsin 2 in mice. Proc Natl Acad Sci USA. 2009, 106: 13838-43. 10.1073/pnas.0907008106.PubMed CentralView ArticlePubMedGoogle Scholar
- Pankratz N, Wilk JB, Latourelle JC, DeStefano AL, Halter C, Pugh EW, Doheny KF, Gusella JF, Nichols WC, Foroud T, et al: Genomewide association study for susceptibility genes contributing to familial Parkinson disease. Hum Genet. 2009, 124: 593-605. 10.1007/s00439-008-0582-9.PubMed CentralView ArticlePubMedGoogle Scholar
- Abdelilah S, Mountcastle-Shah E, Harvey M, Solnica-Krezel L, Schier AF, Stemple DL, Malicki J, Neuhauss SC, Zwartkruis F, Stainier DY, et al: Mutations affecting neural survival in the zebrafish Danio rerio. Development. 1996, 123: 217-27.PubMedGoogle Scholar
- Westerfield M: The zebrafish book: a guide for the laboratory use of zebrafish (Brachydanio rerio). [Eugene, OR]. Edited by: Westerfield M. 1993Google Scholar
- Wolff T: Histological Techniques for the Drosophila eye. Parts I and II. Drosophila Protocols. Edited by: Sullivan W, Ashburner M, Hawley RS. 2000, Cold Spring Harbor, NY: Cold Spring Harbor Laboratory Press, 201-244.Google Scholar
- Brand AH, Perrimon N: Targeted gene expression as a means of altering cell fates and generating dominant phenotypes. Development. 1993, 118: 401-15.PubMedGoogle Scholar
- Szeto DP, Kimelman D: Combinatorial gene regulation by Bmp and Wnt in zebrafish posterior mesoderm formation. Development. 2004, 131: 3751-60. 10.1242/dev.01236.View ArticlePubMedGoogle Scholar
- Cole LK, Ross LS: Apoptosis in the developing zebrafish embryo. Dev Biol. 2001, 240: 123-42. 10.1006/dbio.2001.0432.View ArticlePubMedGoogle Scholar
This article is published under license to BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.