Sadler TW: Langman's Medical Embryology. 2004, Baltimore and Philadelphia: Lippincott Williams & Wilkins, 9
Google Scholar
Betchaku T, Trinkaus JP: Contact relations, surface activity, and cortical microfilaments of marginal cells of the enveloping layer and of the yolk syncytial and yolk cytoplasmic layers of fundulus before and during epiboly. J Exp Zool. 1978, 206: 381-426. 10.1002/jez.1402060310.
Article
CAS
PubMed
Google Scholar
Kimmel CB, Ballard WW, Kimmel SR, Ullmann B, Schilling TF: Stages of embryonic development of the zebrafish. Dev Dyn. 1995, 203: 253-310.
Article
CAS
PubMed
Google Scholar
Kwon GS, Viotti M, Hadjantonakis AK: The endoderm of the mouse embryo arises by dynamic widespread intercalation of embryonic and extraembryonic lineages. Dev Cell. 2008, 15: 509-20. 10.1016/j.devcel.2008.07.017.
Article
PubMed Central
CAS
PubMed
Google Scholar
Oteiza P, Koppen M, Concha ML, Heisenberg CP: Origin and shaping of the laterality organ in zebrafish. Development. 2008, 135: 2807-13. 10.1242/dev.022228.
Article
CAS
PubMed
Google Scholar
Kimmel CB, Warga RM, Schilling TF: Origin and organization of the zebrafish fate map. Development. 1990, 108: 581-94.
CAS
PubMed
Google Scholar
Yoon C, Kawakami K, Hopkins N: Zebrafish vasa homologue RNA is localized to the cleavage planes of 2- and 4-cell-stage embryos and is expressed in the primordial germ cells. Development. 1997, 124: 3157-65.
CAS
PubMed
Google Scholar
Solnica-Krezel L, Driever W: Microtubule arrays of the zebrafish yolk cell: organization and function during epiboly. Development. 1994, 120: 2443-55.
CAS
PubMed
Google Scholar
Kimmel CB, Law RD: Cell lineage of zebrafish blastomeres. II. Formation of the yolk syncytial layer. Dev Biol. 1985, 108: 86-93. 10.1016/0012-1606(85)90011-9.
Article
CAS
PubMed
Google Scholar
D'Amico LA, Cooper MS: Morphogenetic domains in the yolk syncytial layer of axiating zebrafish embryos. Dev Dyn. 2001, 222: 611-24. 10.1002/dvdy.1216.
Article
PubMed
Google Scholar
Hirata T, Yamanaka Y, Ryu SL, Shimizu T, Yabe T, Hibi M, Hirano T: Novel mix-family homeobox genes in zebrafish and their differential regulation. Biochem Biophys Res Commun. 2000, 271: 603-9. 10.1006/bbrc.2000.2672.
Article
CAS
PubMed
Google Scholar
Feldman B, Gates MA, Egan ES, Dougan ST, Rennebeck G, Sirotkin HI, Schier AF, Talbot WS: Zebrafish organizer development and germ-layer formation require nodal- related signals. Nature. 1998, 395: 181-5. 10.1038/26013.
Article
CAS
PubMed
Google Scholar
Babin PJ, Thisse C, Durliat M, Andre M, Akimenko MA, Thisse B: Both apolipoprotein E and A-I genes are present in a nonmammalian vertebrate and are highly expressed during embryonic development. Proc Natl Acad Sci USA. 1997, 94: 8622-7. 10.1073/pnas.94.16.8622.
Article
PubMed Central
CAS
PubMed
Google Scholar
Walzer C, Schonenberger N: Ultrastructure and cytochemistry of the yolk syncytial layer in the alevin of trout (Salmo fario trutta L. and Salmo gairdneri R.) after hatching. II. The cytoplasmic zone. Cell Tissue Res. 1979, 196: 75-93.
CAS
PubMed
Google Scholar
Keller RE, Trinkaus JP: Rearrangement of enveloping layer cells without disruption of the epithelial permeability barrier as a factor in Fundulus epiboly. Dev Biol. 1987, 120: 12-24. 10.1016/0012-1606(87)90099-6.
Article
CAS
PubMed
Google Scholar
Chen S, Kimelman D: The role of the yolk syncytial layer in germ layer patterning in zebrafish. Development. 2000, 127: 4681-9.
CAS
PubMed
Google Scholar
Mizuno T, Yamaha E, Wakahara M, Kuroiwa A, Takeda H: Mesoderm induction in zebrafish (commentary). Nature. 1996, 383: 131-132. 10.1038/383131a0.
Article
CAS
Google Scholar
Fan X, Hagos EG, Xu B, Sias C, Kawakami K, Burdine RD, Dougan ST: Nodal signals mediate interactions between the extra-embryonic and embryonic tissues in zebrafish. Dev Biol. 2007, 310: 363-78. 10.1016/j.ydbio.2007.08.008.
Article
CAS
PubMed
Google Scholar
Rodaway A, Takeda H, Koshida S, Broadbent J, Price B, Smith JC, Patient R, Holder N: Induction of the mesendoderm in the zebrafish germ ring by yolk cell- derived TGF-beta family signals and discrimination of mesoderm and endoderm by FGF. Development. 1999, 126: 3067-78.
CAS
PubMed
Google Scholar
Mizuno T, Yamaha E, Kuroiwa A, Takeda H: Removal of vegetal yolk causes dorsal deficencies and impairs dorsal-inducing ability of the yolk cell in zebrafish. Mech Dev. 1999, 81: 51-63. 10.1016/S0925-4773(98)00202-0.
Article
CAS
PubMed
Google Scholar
Ober EA, Schulte-Merker S: Signals from the yolk cell induce mesoderm, neuroectoderm, the trunk organizer, and the notochord in zebrafish. Dev Biol. 1999, 215: 167-81. 10.1006/dbio.1999.9455.
Article
CAS
PubMed
Google Scholar
Kudoh T, Tsang M, Hukriede NA, Chen X, Dedekian M, Clarke CJ, Kiang A, Schultz S, Epstein JA, Toyama R, et al: A gene expression screen in zebrafish embryogenesis. Genome Res. 2001, 11: 1979-87. 10.1101/gr.209601.
Article
CAS
PubMed
Google Scholar
Mathavan S, Lee SG, Mak A, Miller LD, Murthy KR, Govindarajan KR, Tong Y, Wu YL, Lam SH, Yang H, et al: Transcriptome analysis of zebrafish embryogenesis using microarrays. PLoS Genet. 2005, 1: 260-76. 10.1371/journal.pgen.0010029.
Article
CAS
PubMed
Google Scholar
Brown JL, Snir M, Noushmehr H, Kirby M, Hong SK, Elkahloun AG, Feldman B: Transcriptional profiling of endogenous germ layer precursor cells identifies dusp4 as an essential gene in zebrafish endoderm specification. Proc Natl Acad Sci USA. 2008, 105: 12337-42. 10.1073/pnas.0805589105.
Article
PubMed Central
CAS
PubMed
Google Scholar
Gritsman K, Talbot WS, Schier AF: Nodal signaling patterns the organizer. Development. 2000, 127: 921-932.
CAS
PubMed
Google Scholar
Bennett JT, Joubin K, Cheng S, Aanstad P, Herwig R, Clark M, Lehrach H, Schier AF: Nodal signaling activates differentiation genes during zebrafish gastrulation. Dev Biol. 2007, 304: 525-40. 10.1016/j.ydbio.2007.01.012.
Article
PubMed Central
CAS
PubMed
Google Scholar
Dickmeis T, Mourrain P, Saint-Etienne L, Fischer N, Aanstad P, Clark M, Strahle U, Rosa F: A crucial component of the endoderm formation pathway, CASANOVA, is encoded by a novel sox-related gene. Genes Dev. 2001, 15: 1487-92. 10.1101/gad.196901.
Article
PubMed Central
CAS
PubMed
Google Scholar
Kikuchi Y, Agathon A, Alexander J, Thisse C, Waldron S, Yelon D, Thisse B, Stainier DY: casanova encodes a novel Sox-related protein necessary and sufficient for early endoderm formation in zebrafish. Genes Dev. 2001, 15: 1493-505. 10.1101/gad.892301.
Article
PubMed Central
CAS
PubMed
Google Scholar
Sakaguchi T, Kuroiwa A, Takeda H: A novel sox gene, 226D7, acts downstream of Nodal signaling to specify endoderm precursors in zebrafish. Mech Dev. 2001, 107: 25-38. 10.1016/S0925-4773(01)00453-1.
Article
CAS
PubMed
Google Scholar
Thisse B, Pflumio S, Fürthauer M, Loppin B, Heyer V, Degrave A, Woehl R, Lux A, Steffan T, Charbonnier XQ, et al: Expression of the zebrafish genome during embryogenesis. Book Expression of the zebrafish genome during embryogenesis. City. 2001
Google Scholar
Thisse B, Thisse C: A High Throughput Expression Analysis. Book Fast Release Clones: A High Throughput Expression Analysis. City. 2004
Google Scholar
Aoki TO, David NB, Minchiotti G, Saint-Etienne L, Dickmeis T, Persico GM, Strahle U, Mourrain P, Rosa FM: Molecular integration of casanova in the Nodal signalling pathway controlling endoderm formation. Development. 2002, 129: 275-86.
CAS
PubMed
Google Scholar
Rauch GJ, Lyons DA, Middendorf I, Friedlander B, Arana N, Reyes T, Talbot WS: Submission and Curation of Gene Expression Data. Book Submission and Curation of Gene Expression Data. City. 2003
Google Scholar
Arnaud E, Ferri KF, Thibaut J, Haftek-Terreau Z, Aouacheria A, Le Guellec D, Lorca T, Gillet G: The zebrafish bcl-2 homologue Nrz controls development during somitogenesis and gastrulation via apoptosis-dependent and -independent mechanisms. Cell Death Differ. 2006, 13: 1128-37. 10.1038/sj.cdd.4401797.
Article
CAS
PubMed
Google Scholar
Warga RM, Kane DA: A role for N-cadherin in mesodermal morphogenesis during gastrulation. Dev Biol. 2007, 310: 211-25. 10.1016/j.ydbio.2007.06.023.
Article
CAS
PubMed
Google Scholar
Bischof J, Driever W: Regulation of hhex expression in the yolk syncytial layer, the potential Nieuwkoop center homolog in zebrafish. Dev Biol. 2004, 276: 552-62. 10.1016/j.ydbio.2004.09.035.
Article
CAS
PubMed
Google Scholar
Rhinn M, Lun K, Amores A, Yan YL, Postlethwait JH, Brand M: Cloning, expression and relationship of zebrafish gbx1 and gbx2 genes to Fgf signaling. Mech Dev. 2003, 120: 919-36. 10.1016/S0925-4773(03)00135-7.
Article
CAS
PubMed
Google Scholar
Lewis J: From signals to patterns: space, time, and mathematics in developmental biology. Science. 2008, 322: 399-403. 10.1126/science.1166154.
Article
CAS
PubMed
Google Scholar
Jackle H, Hoch M, Pankratz MJ, Gerwin N, Sauer F, Bronner G: Transcriptional control by Drosophila gap genes. J Cell Sci Suppl. 1992, 16: 39-51.
Article
CAS
PubMed
Google Scholar
Sprague J, Bayraktaroglu L, Clements D, Conlin T, Fashena D, Frazer K, Haendel M, Howe DG, Mani P, Ramachandran S, et al: The Zebrafish Information Network: the zebrafish model organism database. Nucleic Acids Res. 2006, 34: D581-5. 10.1093/nar/gkj086.
Article
PubMed Central
CAS
PubMed
Google Scholar
Chen Y, Schier AF: The zebrafish Nodal signal Squint functions as a morphogen. Nature. 2001, 411: 607-10. 10.1038/35079121.
Article
CAS
PubMed
Google Scholar
Tong ZB, Gold L, Pfeifer KE, Dorward H, Lee E, Bondy CA, Dean J, Nelson LM: Mater, a maternal effect gene required for early embryonic development in mice. Nat Genet. 2000, 26: 267-8. 10.1038/81547.
Article
CAS
PubMed
Google Scholar
Zhang J, Houston DW, King ML, Payne C, Wylie C, Heasman J: The role of maternal VegT in establishing the primary germ layers in Xenopus embryos. Cell. 1998, 94: 515-24. 10.1016/S0092-8674(00)81592-5.
Article
CAS
PubMed
Google Scholar
Dosch R, Wagner DS, Mintzer KA, Runke G, Wiemelt AP, Mullins MC: Maternal control of vertebrate development before the midblastula transition: mutants from the zebrafish I. Dev Cell. 2004, 6: 771-80. 10.1016/j.devcel.2004.05.002.
Article
CAS
PubMed
Google Scholar
Harvey SA, Smith JC: Visualisation and quantification of morphogen gradient formation in the zebrafish. PLoS Biol. 2009, 7: e1000101-10.1371/journal.pbio.1000101.
Article
PubMed Central
PubMed
Google Scholar
Feldman B, Concha ML, Saúde L, Parsons MJ, Adams RJ, Wilson SW, Stemple DL: Lefty antagonism of Squint is essential for normal gastrulation. Curr Biol. 2002, 12: 2129-35. 10.1016/S0960-9822(02)01361-1.
Article
CAS
PubMed
Google Scholar
Thisse C, Thisse B: High Resolution Whole-Mount in situ Hybridization. The Zebrafish Science Monitor. 1998, 5:
Google Scholar
Neave B, Rodaway A, Wilson SW, Patient R, Holder N: Expression of zebrafish GATA 3 (gta3) during gastrulation and neurulation suggests a role in the specification of cell fate. Mech Dev. 1995, 51: 169-82. 10.1016/0925-4773(95)00351-7.
Article
CAS
PubMed
Google Scholar
Brown JD, Dutta S, Bharti K, Bonner RF, Munson PJ, Dawid IB, Akhtar AL, Onojafe IF, Alur RP, Gross JM, et al: Expression profiling during ocular development identifies 2 Nlz genes with a critical role in optic fissure closure. Proc Natl Acad Sci USA. 2009, 106: 1462-7. 10.1073/pnas.0812017106.
Article
PubMed Central
CAS
PubMed
Google Scholar
Hoyle J, Tang YP, Wiellette EL, Wardle FC, Sive H: nlz gene family is required for hindbrain patterning in the zebrafish. Dev Dyn. 2004, 229: 835-46. 10.1002/dvdy.20001.
Article
CAS
PubMed
Google Scholar
Runko AP, Sagerstrom CG: Isolation of nlz2 and characterization of essential domains in Nlz family proteins. J Biol Chem. 2004, 279: 11917-25. 10.1074/jbc.M310076200.
Article
CAS
PubMed
Google Scholar
Sun Z, Hopkins N: vhnf1, the MODY5 and familial GCKD-associated gene, regulates regional specification of the zebrafish gut, pronephros, and hindbrain. Genes Dev. 2001, 15: 3217-29. 10.1101/gad946701.
Article
PubMed Central
CAS
PubMed
Google Scholar
Lyons SE, Shue BC, Lei L, Oates AC, Zon LI, Liu PP: Molecular cloning, genetic mapping, and expression analysis of four zebrafish c/ebp genes. Gene. 2001, 281: 43-51. 10.1016/S0378-1119(01)00774-0.
Article
CAS
PubMed
Google Scholar
Woods IG, Wilson C, Friedlander B, Chang P, Reyes DK, Nix R, Kelly PD, Chu F, Postlethwait JH, Talbot WS: The zebrafish gene map defines ancestral vertebrate chromosomes. Genome Res. 2005, 15: 1307-14. 10.1101/gr.4134305.
Article
PubMed Central
CAS
PubMed
Google Scholar
Donovan A, Brownlie A, Zhou Y, Shepard J, Pratt SJ, Moynihan J, Paw BH, Drejer A, Barut B, Zapata A, et al: Positional cloning of zebrafish ferroportin1 identifies a conserved vertebrate iron exporter. Nature. 2000, 403: 776-81. 10.1038/35001596.
Article
CAS
PubMed
Google Scholar
Hughes I, Blasiole B, Huss D, Warchol ME, Rath NP, Hurle B, Ignatova E, Dickman JD, Thalmann R, Levenson R, et al: Otopetrin 1 is required for otolith formation in the zebrafish Danio rerio. Dev Biol. 2004, 276: 391-402. 10.1016/j.ydbio.2004.09.001.
Article
PubMed Central
CAS
PubMed
Google Scholar
Sollner C, Schwarz H, Geisler R, Nicolson T: Mutated otopetrin 1 affects the genesis of otoliths and the localization of Starmaker in zebrafish. Dev Genes Evol. 2004, 214: 582-90. 10.1007/s00427-004-0440-2.
Article
PubMed
Google Scholar
Strausberg RL, Feingold EA, Grouse LH, Derge JG, Klausner RD, Collins FS, Wagner L, Shenmen CM, Schuler GD, Altschul SF, et al: Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Proc Natl Acad Sci USA. 2002, 99: 16899-903. 10.1073/pnas.242603899.
Article
PubMed
Google Scholar
Braun MH, Steele SL, Ekker M, Perry SF: Nitrogen excretion in developing zebrafish (Danio rerio): a role for Rh proteins and urea transporters. Am J Physiol Renal Physiol. 2009, 296: F994-F1005. 10.1152/ajprenal.90656.2008.
Article
CAS
PubMed
Google Scholar
Chen WY, John JA, Lin CH, Chang CY: Molecular cloning and developmental expression of zinc finger transcription factor MTF-1 gene in zebrafish, Danio rerio. Biochem Biophys Res Commun. 2002, 291: 798-805. 10.1006/bbrc.2002.6517.
Article
CAS
PubMed
Google Scholar
Behra M, Bradsher J, Sougrat R, Gallardo V, Allende ML, Burgess SM: Phoenix is required for mechanosensory hair cell regeneration in the zebrafish lateral line. PLoS Genet. 2009, 5: e1000455-10.1371/journal.pgen.1000455.
Article
PubMed Central
PubMed
Google Scholar