Scicolone G, Ortalli AL, Carri NG: Key roles of Ephs and ephrins in retinotectal topographic map formation. Brain Res Bull. 2009, 79: 227-247.
CAS
Google Scholar
Erskine L, Herrera E: The retinal ganglion cell axon’s journey: insights into molecular mechanisms of axon guidance. Dev Biol. 2007, 308: 1-14.
CAS
Google Scholar
Isenmann S, Kretz A, Cellerino A: Molecular determinants of retinal ganglion cell development, survival, and regeneration. Prog Retin Eye Res. 2003, 22: 483-543.
CAS
Google Scholar
Feldheim DA, O’Leary DDM: Visual map development: bidirectional signaling, bifunctional guidance molecules, and competition. Cold Spring Harb Perspect Biol. 2010, 2: a001768-
CAS
Google Scholar
McLaughlin T, Hindges R, O’Leary DD: Regulation of axial patterning of the retina and its topographic mapping in the brain. Curr Opin Neurobiol. 2003, 13: 57-69.
CAS
Google Scholar
Reese BE: Development of the retina and optic pathway. Vis Res. 2011, 51: 613-632.
Google Scholar
Harada T, Harada C, Parada LF: Molecular regulation of visual system development: more than meets the eye. Genes Dev. 2007, 21: 367-378.
CAS
Google Scholar
Campbell DS, Regan AG, Lopez JS, Tannahill D, Harris WA, Holt CE: Semaphorin 3A elicits stage-dependent collapse, turning, and branching in Xenopus retinal growth cones. J Neurosci. 2001, 21: 8538-8547.
CAS
Google Scholar
Kita EM, Bertolesi GE, Hehr CL, Johnston J, McFarlane S: Neuropilin-1 biases dendrite polarization in the retina. Development. 2013, 140: 2933-2941.
CAS
Google Scholar
Halloran MC, Severance SM, Yee CS, Gemza DL, Raper JA, Kuwada JY: Analysis of a Zebrafish semaphorin reveals potential functions in vivo. Dev Dyn. 1999, 214: 13-25.
CAS
Google Scholar
Liu Y, Berndt J, Su F, Tawarayama H, Shoji W, Kuwada JY, Halloran MC: Semaphorin3D guides retinal axons along the dorsoventral axis of the tectum. J Neurosci. 2004, 24: 310-318.
CAS
Google Scholar
Sakai JA, Halloran MC: Semaphorin 3d guides laterality of retinal ganglion cell projections in zebrafish. Development. 2006, 133: 1035-1044.
CAS
Google Scholar
Callander DC, Lamont RE, Childs SJ, McFarlane S: Expression of multiple class three semaphorins in the retina and along the path of zebrafish retinal axons. Dev Dyn. 2007, 236: 2918-2924.
CAS
Google Scholar
Dell AL, Fried-Cassorla E, Xu H, Raper JA: cAMP-induced expression of neuropilin1 promotes retinal axon crossing in the zebrafish optic chiasm. J Neurosci. 2013, 33: 11076-11088.
CAS
Google Scholar
Rosenzweig S, Raz-Prag D, Nitzan A, Galron R, Paz M, Jeserich G, Neufeld G, Barzilai A, Solomon AS: Sema-3A indirectly disrupts the regeneration process of goldfish optic nerve after controlled injury. Graefes Arch Clin Exp Ophthalmol. 2010, 248: 1423-1435.
Google Scholar
Luo Y, Shepherd I, Li J, Renzi MJ, Chang S, Raper JA: A family of molecules related to collapsin in the embryonic chick nervous system. Neuron. 1995, 14: 1131-
CAS
Google Scholar
Shepherd I, Luo Y, Raper JA, Chang S: The distribution of collapsin-1 mRNA in the developing chick nervous system. Dev Biol. 1996, 173: 185-199.
CAS
Google Scholar
Takahashi T, Nakamura F, Jin Z, Kalb RG, Strittmatter SM: Semaphorins A and E act as antagonists of neuropilin-1 and agonists of neuropilin-2 receptors. Nat Neurosci. 1998, 1: 487-493.
CAS
Google Scholar
Henke-Fahle S, Beck KW, Püschel AW: Differential responsiveness to the chemorepellent Semaphorin 3A distinguishes Ipsi- and contralaterally projecting axons in the chick midbrain. Dev Biol. 2001, 237: 381-397.
CAS
Google Scholar
Steinbach K, Volkmer H, Schlosshauer B: Semaphorin 3E/collapsin-5 inhibits growing retinal axons. Exp Cell Res. 2002, 279: 52-61.
CAS
Google Scholar
Steffensky M, Steinbach K, Schwarz U, Schlosshauer B: Differential impact of semaphorin 3E and 3A on CNS axons. Int J Dev Neurosci. 2006, 24: 65-72.
CAS
Google Scholar
Matsuoka RL, Chivatakarn O, Badea TC, Samuels IS, Cahill H, Katayama K, Kumar SR, Suto F, Chedotal A, Peachey NS, Nathans J, Yoshida Y, Giger RJ, Kolodkin AL: Class 5 transmembrane semaphorins control selective Mammalian retinal lamination and function. Neuron. 2011, 71: 460-473.
CAS
Google Scholar
Matsuoka RL, Nguyen-Ba-Charvet KT, Parray A, Badea TC, Chedotal A, Kolodkin AL: Transmembrane semaphorin signalling controls laminar stratification in the mammalian retina. Nature. 2011, 470: 259-263.
CAS
Google Scholar
Sun LO, Jiang Z, Rivlin-Etzion M, Hand R, Brady CM, Matsuoka RL, Yau KW, Feller MB, Kolodkin AL: On and off retinal circuit assembly by divergent molecular mechanisms. Science. 2013, 342: 1241974-
Google Scholar
Kuwajima T, Yoshida Y, Takegahara N, Petros TJ, Kumanogoh A, Jessell TM, Sakurai T, Mason C: Optic chiasm presentation of Semaphorin6D in the context of Plexin-A1 and Nr-CAM promotes retinal axon midline crossing. Neuron. 2012, 74: 676-690.
CAS
Google Scholar
Unified Nomenclature for the Semaphorins/Collapsins. Cell. 1999, 97: 551-552.
de Winter F, Cui Q, Symons N, Verhaagen J, Harvey AR: Expression of class-3 semaphorins and their receptors in the neonatal and adult rat retina. Invest Ophthalmol Vis Sci. 2004, 45: 4554-4562.
Google Scholar
Roche J, Boldog F, Robinson M, Robinson L, Varella-Garcia M, Swanton M, Waggoner B, Fishel R, Franklin W, Gemmill R, Drabkin H: Distinct 3p21.3 deletions in lung cancer and identification of a new human semaphorin. Oncogene. 1996, 12: 1289-1297.
CAS
Google Scholar
Kolodkin AL, Matthes DJ, Goodman CS: The semaphorin genes encode a family of transmembrane and secreted growth cone guidance molecules. Cell. 1993, 75: 1389-
CAS
Google Scholar
Luo Y, Raible D, Raper JA: Collapsin: a protein in brain that induces the collapse and paralysis of neuronal growth cones. Cell. 1993, 75: 217-
CAS
Google Scholar
Feiner L, Koppel AM, Kobayashi H, Raper JA: Secreted chick semaphorins bind recombinant neuropilin with similar affinities but bind different subsets of neurons in situ. Neuron. 1997, 19: 539-545.
CAS
Google Scholar
Püschel AW, Adams RH, Betz H: Murine semaphorin D/collapsin is a member of a diverse gene family and creates domains inhibitory for axonal extension. Neuron. 1995, 14: 941-
Google Scholar
Sekido Y, Bader S, Latif F, Chen J-Y, Duh F-M, Wei M-H, Albanesi JP, Lee C-C, Lerman MI, Minna JD: Human semaphorins A (V) and IV reside in the 3p21.3 small cell lung cancer deletion region and demonstrate distinct expression patterns. Proc Natl Acad Sci U S A. 1996, 93: 4120-4125.
CAS
Google Scholar
Xiang R: Isolation of the human semaphorin III/F gene (SEMA3F) at chromosome 3p21, a region deleted in lung cancer. Genomics. 1996, 32: 39-
CAS
Google Scholar
Taniguchi M, Masuda T, Fukaya M, Kataoka H, Mishina M, Yaginuma H, Watanabe M, Shimizu T: Identification and characterization of a novel member of murine semaphorin family. Genes Cells. 2005, 10: 785-792.
CAS
Google Scholar
Stevens CB, Halloran MC: Developmental expression of sema3G, a novel zebrafish semaphorin. Gene Expr Patterns. 2005, 5: 647-653.
CAS
Google Scholar
Sharma A, Verhaagen J, Harvey AR: Receptor complexes for each of the Class 3 Semaphorins. Front Cell Neurosci. 2012, 6: 28-
CAS
Google Scholar
Kolodkin AL, Matthes DJ, O’Connor TP, Patel NH, Admon A, Bentley D, Goodman CS: Fasciclin IV: sequence, expression, and function during growth cone guidance in the grasshopper embryo. Neuron. 1992, 9: 831-845.
CAS
Google Scholar
Roth L, Koncina E, Satkauskas S, Cremel G, Aunis D, Bagnard D: The many faces of semaphorins: from development to pathology. Cell Mol Life Sci. 2009, 66: 649-666.
CAS
Google Scholar
Yazdani U, Terman JR: The semaphorins. Genome Biol. 2006, 7: 211-
Google Scholar
Mizui M, Kumanogoh A, Kikutani H: Immune semaphorins: novel features of neural guidance molecules. J Clin Immunol. 2009, 29: 1-11.
CAS
Google Scholar
Pasterkamp RJ, Giger RJ: Semaphorin function in neural plasticity and disease. Curr Opin Neurobiol. 2009, 19: 263-274.
CAS
Google Scholar
Suzuki K, Kumanogoh A, Kikutani H: Semaphorins and their receptors in immune cell interactions. Nat Immunol. 2008, 9: 17-23.
CAS
Google Scholar
Neufeld G, Kessler O: The semaphorins: versatile regulators of tumour progression and tumour angiogenesis. Nat Rev Cancer. 2008, 8: 632-645.
CAS
Google Scholar
Claudepierre T, Koncina E, Pfrieger FW, Bagnard D, Aunis D, Reber M: Implication of neuropilin 2/semaphorin 3F in retinocollicular map formation. Dev Dyn. 2008, 237: 3394-3403.
CAS
Google Scholar
Kim J, Oh WJ, Gaiano N, Yoshida Y, Gu C: Semaphorin 3E-Plexin-D1 signaling regulates VEGF function in developmental angiogenesis via a feedback mechanism. Genes Dev. 2011, 25: 1399-1411.
CAS
Google Scholar
Sefton AJ, Dreher B, Harvey A: Visual system. The Rat Nervous System. Edited by: Paxinos G. 2004, Elsevier Academic Press, San Diego, 1083-1165. 3
Google Scholar
Rapaport DH, Wong LL, Wood ED, Yasumura D, LaVail MM: Timing and topography of cell genesis in the rat retina. J Comp Neurol. 2004, 474: 304-324.
Google Scholar
Agathocleous M, Harris WA: Cell determination. Retinal Development. Edited by: Sernagor E, Eglen S, Harris B, Wong R. 2006, Cambridge University Press, Cambridge, 75-98.
Google Scholar
Rapaport DH: Retinal Neurogenesis. Retinal Development. Edited by: Sernagor E, Eglen S, Harris B, Wong R. 2006, Cambridge University Press, Cambridge, 30-58.
Google Scholar
Chan-Ling T, Chu Y, Baxter L, Weible Ii M, Hughes S: In vivo characterization of astrocyte precursor cells (APCs) and astrocytes in developing rat retinae: differentiation, proliferation, and apoptosis. Glia. 2009, 57: 39-53.
Google Scholar
Dallimore EJ, Park KK, Pollett MA, Taylor JSH, Harvey AR: The life, death and regenerative ability of immature and mature rat retinal ganglion cells are influenced by their birthdate. Exp Neurol. 2010, 225: 353-365.
Google Scholar
Dreher B, Potts RA, Bennett MR: Evidence that the early postnatal reduction in the number of rat retinal ganglion cells is due to a wave of ganglion cell death. Neurosci Lett. 1983, 36: 255-260.
CAS
Google Scholar
Horsburgh GM, Sefton AJ: Cellular degeneration and synaptogenesis in the developing retina of the rat. J Comp Neurol. 1987, 263: 553-566.
CAS
Google Scholar
Potts RA, Dreher B, Bennett MR: The loss of ganglion cells in the developing retina of the rat. Dev Brain Res. 1982, 3: 481-486.
Google Scholar
Crespo D, O’Leary DD, Cowan WM: Changes in the numbers of optic nerve fibers during late prenatal and postnatal development in the albino rat. Brain Res. 1985, 351: 129-134.
CAS
Google Scholar
Perry VH, Henderson Z, Linden R: Postnatal changes in retinal ganglion cell and optic axon populations in the pigmented rat. J Comp Neurol. 1983, 219: 356-368.
CAS
Google Scholar
Fruttiger M: Development of the retinal vasculature. Angiogenesis. 2007, 10: 77-88.
Google Scholar
Dhingra NK, Ramamohan Y, Raju TR: Developmental expression of synaptophysin, synapsin I and syntaxin in the rat retina. Brain Res Dev Brain Res. 1997, 102: 267-273.
CAS
Google Scholar
Sarthy PV, Bacon W: Developmental expression of a synaptic vesicle-specific protein in the rat retina. Dev Biol. 1985, 112: 284-291.
CAS
Google Scholar
Kapfhammer JP, Christ F, Schwab ME: The expression of GAP-43 and synaptophysin in the developing rat retina. Brain Res Dev Brain Res. 1994, 80: 251-260.
CAS
Google Scholar
Weidman TA, Kuwabara T: Postnatal development of the rat retina. An electron microscopic study. Arch Ophthalmol. 1968, 79: 470-484.
CAS
Google Scholar
Olney JW: An electron microscopic study of synapse formation, receptor outer segment development, and other aspects of developing mouse retina. Invest Ophthalmol. 1968, 7: 250-268.
CAS
Google Scholar
Altman J, Bayer SA: Time of origin of neurons of the rat superior colliculus in relation to other components of the visual and visuomotor pathways. Exp Brain Res. 1981, 42: 424-434.
CAS
Google Scholar
Mustari MJ, Lund RD, Graubard K: Histogenesis of the superior colliculus of the albino rat: a tritiated thymidine study. Brain Res. 1979, 164: 39-52.
CAS
Google Scholar
Giordano DL, Murray M, Cunningham TJ: Naturally occurring neuron death in the optic layers of superior colliculus of the postnatal rat. J Neurocytol. 1980, 9: 603-614.
CAS
Google Scholar
Giordano DL, Cunningham TJ: Optic afferents, neuron maturation, and neuron survival in the rat superior colliculus. Brain Res. 1982, 256: 365-368.
CAS
Google Scholar
Warton SS, Jones DG: Postnatal development of the superficial layers in the rat superior colliculus: a study with Golgi-Cox and Kluver-Barrera techniques. Exp Brain Res. 1985, 58: 490-502.
CAS
Google Scholar
Warton SS, McCart R: Synaptogenesis in the stratum griseum superficiale of the rat superior colliculus. Synapse. 1989, 3: 136-148.
CAS
Google Scholar
Lund RD, Lund JS: Development of synaptic patterns in the superior colliculus of the rat. Brain Res. 1972, 42: 1-20.
CAS
Google Scholar
Bunt SM, Lund RD, Land PW: Prenatal development of the optic projection in albino and hooded rats. Brain Res. 1983, 282: 149-168.
CAS
Google Scholar
Dallimore EJ, Cui Q, Beazley LD, Harvey AR: Postnatal innervation of the rat superior colliculus by axons of late-born retinal ganglion cells. Eur J Neurosci. 2002, 16: 1295-1304.
Google Scholar
Thong IG, Dreher B: The development of the corticotectal pathway in the albino rat: transient projections from the visual and motor cortices. Neurosci Lett. 1987, 80: 275-282.
CAS
Google Scholar
de Winter F, Oudega M, Lankhorst AJ, Hamers FP, Blits B, Ruitenberg MJ, Pasterkamp RJ, Gispen WH, Verhaagen J: Injury-induced class 3 semaphorin expression in the rat spinal cord. Exp Neurol. 2002, 175: 61-75.
CAS
Google Scholar
de Wit J, de Winter F, Klooster J, Verhaagen J: Semaphorin 3A displays a punctate distribution on the surface of neuronal cells and interacts with proteoglycans in the extracellular matrix. Mol Cell Neurosci. 2005, 29: 40-55.
CAS
Google Scholar
Davenport RW, Thies E, Cohen ML: Neuronal growth cone collapse triggers lateral extensions along trailing axons. Nat Neurosci. 1999, 2: 254-259.
CAS
Google Scholar
Tran TS, Kolodkin AL, Bharadwaj R: Semaphorin regulation of cellular morphology. Annu Rev Cell Dev Biol. 2007, 23: 263-292.
CAS
Google Scholar
Torre ER, Gutekunst C-A, Gross RE: Expression by midbrain dopamine neurons of Sema3A and 3F receptors is associated with chemorepulsion in vitro but a mild in vivo phenotype. Mol Cell Neurosci. 2010, 44: 135-153.
CAS
Google Scholar
Buehler A, Sitaras N, Favret S, Bucher F, Berger S, Pielen A, Joyal JS, Juan AM, Martin G, Schlunck G, Agostini HT, Klagsbrun M, Smith LE, Sapieha P, Stahl A: Semaphorin 3F forms an anti-angiogenic barrier in outer retina. FEBS Lett. 2013, 587: 1650-1655.
CAS
Google Scholar
Edwards MA, Caviness VS, Schneider GE: Development of cell and fiber lamination in the mouse superior colliculus. J Comp Neurol. 1986, 248: 395-409.
CAS
Google Scholar
Shirvan A, Kimron M, Holdengreber V, Ziv I, Ben-Shaul Y, Melamed S, Melamed E, Barzilai A, Solomon AS: Anti-semaphorin 3A antibodies rescue retinal ganglion cells from cell death following optic nerve axotomy. J Biol Chem. 2002, 277: 49799-49807.
CAS
Google Scholar
Shirvan A, Ziv I, Fleminger G, Shina R, He Z, Brudo I, Melamed E, Barzilai A: Semaphorins as mediators of neuronal apoptosis. J Neurochem. 1999, 73: 961-971.
CAS
Google Scholar
Gagliardini V, Fankhauser C: Semaphorin III can induce death in sensory neurons. Mol Cell Neurosci. 1999, 14: 301-316.
CAS
Google Scholar
Ben-Zvi A, Manor O, Schachner M, Yaron A, Tessier-Lavigne M, Behar O: The Semaphorin receptor PlexinA3 mediates neuronal apoptosis during dorsal root ganglia development. J Neurosci. 2008, 28: 12427-12432.
CAS
Google Scholar
Bagnard D, Vaillant C, Khuth ST, Dufay N, Lohrum M, Püschel AW, Belin MF, Bolz J, Thomasset N: Semaphorin 3A-vascular endothelial growth factor-165 balance mediates migration and apoptosis of neural progenitor cells by the recruitment of shared receptor. J Neurosci. 2001, 21: 3332-3341.
CAS
Google Scholar
Bagnard D, Sainturet N, Meyronet D, Perraut M, Miehe M, Roussel G, Aunis D, Belin MF, Thomasset N: Differential MAP kinases activation during semaphorin3A-induced repulsion or apoptosis of neural progenitor cells. Mol Cell Neurosci. 2004, 25: 722-731.
CAS
Google Scholar
Schlomann U, Schwamborn JC, Muller M, Fassler R, Püschel AW: The stimulation of dendrite growth by Sema3A requires integrin engagement and focal adhesion kinase. J Cell Sci. 2009, 122: 2034-2042.
CAS
Google Scholar
Polleux F, Morrow T, Ghosh A: Semaphorin 3A is a chemoattractant for cortical apical dendrites. Nature. 2000, 404: 567-573.
CAS
Google Scholar
Morita A, Yamashita N, Sasaki Y, Uchida Y, Nakajima O, Nakamura F, Yagi T, Taniguchi M, Usui H, Katoh-Semba R, Takei K, Goshima Y: Regulation of dendritic branching and spine maturation by semaphorin3A-Fyn signaling. J Neurosci. 2006, 26: 2971-2980.
CAS
Google Scholar
Vo T, Carulli D, Ehlert EME, Kwok JCF, Dick G, Mecollari V, Moloney EB, Neufeld G, de Winter F, Fawcett JW, Verhaagen J: The chemorepulsive axon guidance protein semaphorin3A is a constituent of perineuronal nets in the adult rodent brain. Mol Cell Neurosci. 2013, 56: 186-200.
CAS
Google Scholar
Cioni JM, Telley L, Saywell V, Cadilhac C, Jourdan C, Huber AB, Huang JZ, Jahannault-Talignani C, Ango F: SEMA3A signaling controls layer-specific interneuron branching in the cerebellum. Curr Biol. 2013, 23: 850-861.
CAS
Google Scholar
Uesaka N, Uchigashima M, Mikuni T, Nakazawa T, Nakao H, Hirai H, Aiba A, Watanabe M, Kano M: Retrograde semaphorin signaling regulates synapse elimination in the developing mouse brain. Science. 2014, 344: 1020-1023.
CAS
Google Scholar
Demyanenko GP, Maness PF: The L1 cell adhesion molecule is essential for topographic mapping of retinal axons. J Neurosci. 2003, 23: 530-538.
CAS
Google Scholar
Buhusi M, Schlatter MC, Demyanenko GP, Thresher R, Maness PF: L1 interaction with ankyrin regulates mediolateral topography in the retinocollicular projection. J Neurosci. 2008, 28: 177-188.
CAS
Google Scholar
Gong S, Zheng C, Doughty ML, Losos K, Didkovsky N, Schambra UB, Nowak NJ, Joyner A, Leblanc G, Hatten ME, Heintz N: A gene expression atlas of the central nervous system based on bacterial artificial chromosomes. Nature. 2003, 425: 917-925.
CAS
Google Scholar
Low LK, Liu XB, Faulkner RL, Coble J, Cheng HJ: Plexin signaling selectively regulates the stereotyped pruning of corticospinal axons from visual cortex. Proc Natl Acad Sci U S A. 2008, 105: 8136-8141.
CAS
Google Scholar
Sharma A, Pollett MA, Plant GW, Harvey AR: Changes in mRNA expression of class 3 semaphorins and their receptors in the adult rat retino-collicular system after unilateral optic nerve injury. Invest Ophthalmol Vis Sci. 2012, 53: 8367-8377.
CAS
Google Scholar
Ramakers C, Ruijter JM, Deprez RH, Moorman AF: Assumption-free analysis of quantitative real-time polymerase chain reaction (PCR) data. Neurosci Lett. 2003, 339: 62-66.
CAS
Google Scholar
Ruijter JM, Ramakers C, Hoogaars WM, Karlen Y, Bakker O, van den Hoff MJ, Moorman AF: Amplification efficiency: linking baseline and bias in the analysis of quantitative PCR data. Nucleic Acids Res. 2009, 37: e45-
CAS
Google Scholar
Schefe JH, Lehmann KE, Buschmann IR, Unger T, Funke-Kaiser H: Quantitative real-time RT-PCR data analysis: current concepts and the novel gene expression’s CT difference” formula. J Mol Med (Berl). 2006, 84: 901-910.
CAS
Google Scholar
Vandesompele J, De Preter K, Pattyn F, Poppe B, Van Roy N, De Paepe A, Speleman F: Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes. Genome Biol. 2002, 3: Research0034-
Google Scholar
Chen H, Chedotal A, He Z, Goodman CS, Tessier-Lavigne M: Neuropilin-2, a novel member of the neuropilin family, is a high affinity receptor for the semaphorins Sema E and Sema IV but not Sema III. Neuron. 1997, 19: 547-559.
CAS
Google Scholar
Meyer-Franke A, Kaplan MR, Pfieger FW, Barres BA: Characterization of the signaling interactions that promote the survival and growth of developing retinal ganglion cells in culture. Neuron. 1995, 15: 805-819.
CAS
Google Scholar
Kapfhammer JP, Xu H, Raper JA: The detection and quantification of growth cone collapsing activities. Nat Protoc. 2007, 2: 2005-2011.
CAS
Google Scholar