Table 3 List of differentially expressed long non-coding RNAs, as annotated in UCSC.
From: Analysis of the dynamics of limb transcriptomes during mouse development
Gene Symbol | UCSC ID | Location | PhasCons Score (mean) | Orientation to the closest coding gene | Closest Coding Gene | Differential Gene Expression | |
|---|---|---|---|---|---|---|---|
E13.5 vs E11.5 | E15.5 vs E13.5 | ||||||
AK019125 | uc007byu.1 | Chr1 | 0.08663 | head-to-head | Arl4c | 1 | -1 |
AK003315 (Myeov2) | uc007cbq.1 | Chr1 | 0.05824 | head-to-tail | Otos | -1 | 0 |
AK014513 | uc007eem.1 | Chr1 | 0.10996 | tail-to-head | Camk1g | 1 | 1 |
AK082757 | uc008iue.1 | Chr2 | 0.06682 | tail-to-head | Btbd14a | 0 | 1 |
AK007459 | uc008iuf.1 | Chr2 | 0.27284 | head-to-head | Btbd14a | 0 | 1 |
C130021l20Rik | uc008jhz.1 | Chr2 | 0.13674 | head-to-head | Lmx1b | 0 | -1 |
AK030275 | uc008ltx.1 | Chr2 | 0.13798 | head-to-tail | Sid470 | 0 | -1 |
BC048556 | uc008mgc.1 | Chr2 | 0.21847 | tail-to-head | Nphp1 | 1 | 1 |
AK007971 | uc008nqb.1 | Chr2 | 0.09166 | tail-to-tail | Lbp | 0 | -1 |
AK012506 | uc008onz.1 | Chr3 | 0.34076 | antisense | Zfhx4 | 0 | -1 |
AK007373 | uc008rbp.1 | Chr3 | 0.09312 | head-to-head | Dph5 | -1 | 0 |
BC096391 (Snhg8) | uc008rfm.1 | Chr3 | 0.20019 | tail-to-tail | Prss12 | 0 | -1 |
AK080292 | uc008rzc.1 | Chr4 | 0.17915 | head-to-head | Ccne2 | 0 | -1 |
NR_003270 (Snhg3) | uc008vbf.1 | Chr4 | 0.33261 | head-to-tail | Phactr4 | -1 | -1 |
AK083203 | uc008wbz.1 | Chr4 | 0.09120 | haid-to-head | Prdm16 | 0 | -1 |
AK012278 | uc008xth.1 | Chr5 | 0.22535 | head-to-head | Usp46 | -1 | 0 |
2610001J05Rik | uc009ayt.1 | Chr6 | 0.13108 | tail-to-head | Gpr85 | 1 | 0 |
AK002748 | uc009bxj.1 | Chr6 | 0.05646 | head-to-head | Nfe2l3 | 1 | 0 |
AK033508 | uc009byt.1 | Chr6 | 0.19038 | head-to-head | Hoxa13 | -1 | -1 |
AK039589 | uc009cib.1 | Chr6 | 0.08391 | head-to-tail | St3gal5 | 1 | -1 |
AK170805 | uc009ejz.1 | Chr6 | 0.11942 | head-to-head | Tas2r140 | 1 | 0 |
AK011885 | uc009ely.1 | Chr6 | 0.28077 | head-to-head | Atf7ip | 1 | 0 |
H19 | uc009kob.1 | Chr7 | 0.25529 | tail-to-tail | Mrpl23 | -1 | 1 |
AK134636 | uc009las.1 | Chr8 | 0.13898 | tail-to-head | 4930467E23Rik | 1 | 0 |
Phxr4 | uc009odu.1 | Chr9 | 0.09209 | tail-to-head | Maml2 | 1 | 0 |
BC003348 | uc009oek.1 | Chr9 | 0.66034 | head-to-tail | Sesn3 | 0 | -1 |
AK165129 | uc007htj.1 | Chr11 | 0.37820 | head-to-head | Morc2a | 1 | -1 |
AK162965 | uc007jdh.1 | Chr11 | 0.18394 | head-to-head | Mrp155 | 1 | -1 |
AK079857 | uc007kol.1 | Chr11 | 0.06137 | head-to-tail | Slfn3 | 1 | -1 |
BC037520 | uc007mmx.1 | Chr11 | 0.10152 | tail-to-head | Sec14l1 | 1 | 1 |
AK164256 | uc007msb.1 | Chr11 | 0.19866 | head-to-head | Bahcc1 | 0 | -1 |
1700012B15Rik | uc007mwg.1 | Chr12 | 0.64135 | tail-to-tail | Rab10 | 0 | 1 |
AK035058 | uc007nvz.1 | Chr12 | 0.30950 | tail-to-tail | Six1 | 0 | -1 |
AF498300 (Rian) | uc007paz.1 | Chr12 | 0.05280 | head-to-head | Rtl1 | 1 | 1 |
BC025054 | uc007pyi.1 | Chr13 | 0.11581 | head-to-tail | Sox4 | 1 | -1 |
AK087718 | uc007pip.1 | Chr13 | 0.15192 | tail-to-head | Gdi2 | -1 | -1 |
AK021143 | uc007qip.1 | Chr13 | 0.06779 | head-to-head | Fam120a | 1 | -1 |
AK020502 | uc007qlx.1 | Chr13 | 0.09589 | head-to-head | Spin1 | 0 | -1 |
AK029385 | uc007vaf.1 | Chr14 | 0.20634 | tail-to-head | Slc15a1 | -1 | 0 |
AK011684 | uc007vbc.1 | Chr14 | 0.25107 | head-to-head | Zic2 | -1 | 0 |
DQ715667 | uc007wbs.1 | Chr15 | 0.44104 | tail-to-tail | Chrac1 | -1 | 1 |
AK085438 | uc007wpq.1 | Chr15 | 0.10360 | tail-to-head | Rac2 | 1 | -1 |
AK005956 | uc007zwv.1 | Chr16 | 0.13992 | head-to-head | 1110004E09Rik | -1 | 1 |
AK004150 | uc008cek.1 | Chr17 | 0.09964 | head-to-tail | Hspa1b | 0 | -1 |
Malat1 | uc008gfj.1 | Chr19 | 0.34059 | tail-to-head | Scyl1 | 1 | 0 |
Neat1 | uc008gfk.1 | Chr19 | 0.18959 | head-to-tail | Frmd8 | 1 | 1 |
AK051045 | uc008gmk.1 | Chr19 | 0.23573 | head-to-head | Slc3a2 | 0 | -1 |
AK030946 | uc009tdn.1 | ChrX | 0.04767 | head-to-tail | 2610018G03Rik | 1 | -1 |
AK008724 | uc009ura.1 | ChrX | 0.21428 | head-to-head | Kctd12b | 1 | 0 |