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Table 4 Embryogenesis genes and their expression values in Jin668

From: Transcriptomic profiles of non-embryogenic and embryogenic callus cells in a highly regenerative upland cotton line (Gossypium hirsutum L.)

 

A-Subgenome

D-Subgenome

GeneID

Gene description

Arabidopsis Ortholog (GeneID)

GeneID

NEC TMM

EC TMM

GeneID

NEC TMM

EC TMM

WOX5

WUS-related homeobox 5

AT3G11260

Gohir.A10G233000

5.015

0.043

Gohir.D10G245300

2.261

0.234

WUS

WUSHEL

AT2G17950

Gohir.A10G098300

0.223

0.773

Gohir.D10G089500

0

0

Gohir.A12G059800

0

0

Gohir.D12G060100

0

0

WRKY2

WRKY2

AT5G56270

Gohir.A08G026100

3.614

6.522

Gohir.D08G036600

5.855

6.839

Gohir.A13G154100

3.503

6.941

Gohir.D13G158700

2.199

4.291

GRD/RKD4

GROUNDED

AT5G53040

Gohir.A03G051800

0.092

0.682

Gohir.D03G115300

0.027

0.351

BBM

BABY BOOM

AT5G17430

Gohir.A08G227000

4.889

26.808

Gohir.D08G247400

0.372

8.677

LEC1

LEAFY COTYLEDON1

AT1G21970

Gohir.A13G132600

4.363

85.081

Gohir.D13G136000

6.251

110.289

Gohir.A08G025100

0.526

8.433

Gohir.D08G035600

2.069

15.03

FUS3

FUSCA

AT3G26790

Gohir.A07G230400

0.98

17.366

Gohir.D07G237600

1.353

23.266

ABI3

ABSCISIC ACID INSENSITIVE3

AT3G24650

Gohir.A07G154900

0.3

6.25

Gohir.D07G161100

0.047

1.09

AGL15

AGAMOUS-LIKE15

AT5G13790

Gohir.A08G141500

0.193

2.283

Gohir.D08G162600

0.485

4.502

Gohir.A12G100400

0.948

10.919

Gohir.D12G103400

0.901

14.455