Table 3 Over-represented gene ontologies.
From: Identification of genes associated with regenerative success of Xenopus laevishindlimbs
GO Term | No. on array/total genes | No. >2x up-regulated | p | Gene ontology description | Contributing gene TC numbers | |
|---|---|---|---|---|---|---|
| Â | Â | Fraction | % genes on array | Â | Â | Â |
GO:0030150 | 5/13094 | 4/98 | 80% | 1.47E-08 | Protein import into mitochondrial matrix | TC261859, TC262099, TC275000, TC275032 |
GO:0006626 | 22/13094 | 5/98 | 23% | 5.04E-07 | Protein targeting to mitochondrion | TC261859, TC261956, TC262099, TC275000, TC275032 |
GO:0006457 | 82/13094 | 6/98 | 7% | 3.33E-05 | Protein folding | TC261741, TC261742, TC261767, TC262099, TC263531, TC275000 |
GO:0009408 | 27/13094 | 4/98 | 14% | 4.54E-05 | Response to heat | TC261767, TC262099, TC275000, TC275946 |
GO:0006458 | 2/13094 | 2/98 | 100% | 5.54E-05 | De novo protein folding | TC261859, TC275032 |
GO:0006628 | 2/13094 | 2/98 | 100% | 5.54E-05 | Mitochondrial translocation | TC261859, TC275032 |
GO:0042026 | 6/13094 | 2/98 | 33% | 0.001 | Protein refolding | TC262099, TC263531 |
GO:0040007 | 58/13094 | 4/98 | 7% | 0.001 | Growth | TC2612741, TC261742, TC262099, TC275000 |
GO:0006364 | 29/13094 | 3/98 | 10% | 0.001 | rRNA processing | TC261435, TC275446, TC285474 |
GO:0007098 | 8/13094 | 2/98 | 25% | 0.002 | Centrosome cycle | TC263531, TC274052 |
GO:0009792 | 96/13094 | 4/98 | 4% | 0.006 | Embryonic development (metazoa) | TC261741, TC261742, TC262099, TC288722 |
GO:0040010 | 60/13094 | 3/98 | 5% | 0.010 | Positive regulation of growth rate | TC261741, TC261742, TC288722 |
GO:0015671 | 8/13094 | 5/295 | 63% | 2.97E-07 | Oxygen transport | TC262354, TC275583, TC275773, TC279855, TC289552 |
GO:0045104 | 10/13094 | 4/295 | 40% | 4.76E-05 | Intermediate filament organisation and biogenesis | TC260221, TC263972, TC286967, TC287917 |
GO:0030573 | 2/13094 | 2/295 | 100% | 0.001 | Bile acid catabolic process | TC264038, TC265106 |
GO:0015721 | 2/13094 | 2/295 | 100% | 0.001 | Bile acid transport | TC264038, TC265106 |
GO:0008544 | 38/13094 | 5/295 | 13% | 0.002 | Epidermis development | TC260221, TC263972, TC286967, TC287917, TC289357 |
GO:0000902 | 23/13094 | 4/295 | 17% | 0.002 | Cell morphogenesis | TC263972, TC286967, TC287917, TC289357 |
GO:0007155 | 109/13094 | 8/295 | 7% | 0.003 | Cell adhesion | TC260941, TC264675, TC274819, TC275243, TC275517, TC287476, TC288397, TC288694 |
GO:0006796 | 15/13094 | 3/295 | 20% | 0.004 | Phosphate metabolic process | TC265197, TC274479, TC292101 |
GO:0006810 | 234/13094 | 12/295 | 5% | 0.007 | Transport | TC262354, TC264038, TC264071, TC265834, TC271905, TC275007, TC275583, TC275773, TC276787, TC279855, TC288559, TC289552 |
GO:0006694 | 6/13094 | 2/295 | 33% | 0.007 | Steroid biosynthetic process | TC264038, TC265106 |