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Table 1 PCR primers, real-time PCR primers and RNA probe sequence of mouse c-kit gene

From: c-kit expression profile and regulatory factors during spermatogonial stem cell differentiation

Probe name

Probe sequence (5′ → 3′)

PCR primers

 

Exons 10-12

Sense 5′ -TGGGGATCATTGTGATGGT-3′

 

Anti-sense 5′-ATGGCAGCATCCGACTTAAT-3′

Exons 18-20

Sense 5′ - CCTCTGGGAGCTCTTCTCCT-3′

 

Anti-sense 5′- GCTGTCCGAGATCTGCTTCT-3′

Real-time PCR primers

 

Exon 7-8

AACGTTTACGT GAACACAAAACCAG

Exon 20-21

GCACCAAGCACATTTACTCCAACTT

Exon 21+

CTGATATGTTGTCCAACTGTTGACA

Exons 10-12 probe (extracellular domain)

ATGGCAGCATCCGACTTAATCAAGCCATATGCAGTGGCCTCAACGACC

 

TTCCCGAAGGCACCAGCTCCCAATGTCTTTCCAAAACTCAGCCTGTTTC

 

TGGGAAACTCCCATTTGTGATCATAAGGAAGTTGCGTCGGGTCTATGT

 

AAACATAATTGTTTCCATTTATCTCCTCGACAACCTTCCATTGTACTTC

 

ATACATGGGTTTCTGCAAATATTTGTAGGTGAGCAC CATCACAATG

 

ATCCCCAT

Exons 18-20 probe (intracellular domain)

GCTGTCCGAGATCTGCTTCTCAATAAGTTGGACAACCTGCTTGAATGT

 

TGGCCTTTTCAAGGGGTCAGCGTCCCAGCAAGTCTTCATGAC

 

GTCATACATTTCGGCAGGCG CGTGCTCCGG GCTGACCATC

 

CGGAAGCCTTCCTTGATCATCTTGTAGAACTTGGAGTCGACCGGCATC

 

CCTGGGTAGGGGCTGCTTCCTAAGGAGAAGAGCTCCCAGAGG

  1. Exons 10-12 probe hybridizes to c-kit extracellular domain coding area. Exons 18-20 probe hybridizes to c-kit intracellular domain coding area.