Table 2 Genes up-regulated in r4-derived NCCs. Top 25 genes significantly up-regulated in the r4 NCC migratory stream as defined via Cuffdiff and EdgeR. Inf refers to an infinite Log2 fold change due to a value of 0 in r1-r2-derived NCCs
Gene id | r1-2 | r4 | log2 | p value | q value | program |
|---|---|---|---|---|---|---|
Hist1h2bm | 38.20 | 28814.80 | 9.48 | 0.000112 | 0.034 | EdgeR |
Rprl2 | 25.60 | 22710.50 | 9.68 | 2.55E-06 | 0.004 | EdgeR |
Hist2h4 | 87.96 | 8685.48 | 6.63 | 0.00025 | 0.036 | Cuffdiff |
H2afj | 17.84 | 6291.25 | 8.35 | 1.35E-05 | 0.010 | EdgeR |
Rmrp | 21.77 | 5763.60 | 7.93 | 1.87E-05 | 0.012 | EdgeR |
Rpph1 | 5.23 | 2527.22 | 8.80 | 9.54E-06 | 0.008 | EdgeR |
Hist3h2a | 6.03 | 2200.39 | 8.40 | 2.09E-05 | 0.012 | EdgeR |
Acta1 | 10.88 | 752.39 | 6.11 | 0.00015 | 0.024 | Cuffdiff |
Hist1h2bh | 0.00 | 715.46 | inf | 0.00005 | 0.009 | Cuffdiff |
Rbp4 | 13.48 | 674.70 | 5.65 | 0.00025 | 0.036 | Cuffdiff |
Anxa2 | 1.52 | 543.21 | 8.36 | 2.85E-06 | 0.004 | EdgeR |
Afp | 9.49 | 537.17 | 5.82 | 0.00015 | 0.024 | Cuffdiff |
Actc1 | 5.87 | 474.52 | 6.22 | 0.000129 | 0.034 | EdgeR |
Sparc | 28.86 | 458.00 | 3.89 | 0.0002 | 0.049 | EdgeR |
Cav1 | 0.13 | 309.14 | 11.02 | 1.99E-06 | 0.004 | EdgeR |
S100a6 | 3.34 | 298.11 | 6.37 | 0.000124 | 0.034 | EdgeR |
Tgfbi | 9.11 | 294.22 | 4.91 | 5.83E-05 | 0.023 | Both |
Krt14 | 0.29 | 286.73 | 9.84 | 1.02E-07 | 0.001 | EdgeR |
Hist1h3c | 0.00 | 285.48 | inf | 0.00005 | 0.009 | Cuffdiff |
Efhd2 | 13.81 | 216.56 | 3.87 | 0.000128 | 0.034 | Both |
Ptrf | 1.20 | 184.30 | 7.16 | 4.28E-06 | 0.004 | EdgeR |
Trnp1 | 1.21 | 174.43 | 7.06 | 8.76E-05 | 0.031 | EdgeR |
Cited4 | 0.22 | 155.37 | 9.28 | 6.87E-07 | 0.002 | EdgeR |
Des | 3.64 | 142.70 | 5.18 | 1.50E-05 | 0.011 | EdgeR |
Serpine1 | 0.26 | 74.25 | 8.03 | 5.21E-07 | 0.002 | EdgeR |
Hoxa2 | 0.92 | 62.35 | 6.01 | 5.87E-06 | 0.006 | EdgeR |