Table 2 Anatomical representations within the anatomical atlas
Types of graphicsa | Controlled vocabulary or ontology for anatomy | |
|---|---|---|
C. elegans | ||
WormAtlas | • TEMs • illustrations • DIC micrographs • fluorescence micrographs • confocal micrographs (as movies of volumes) • various movies, including 3D reconstructions from ssTEMs | not stated |
OpenWorm Browser (Virtual Worm) | • 3D surface models | not stated |
Ciona intestinalis | ||
ANISEED (“Anatomy” section) | • illustrations | Ciona Developmental Ontology |
FABA | • confocal micrographs (as virtual sections and volumes) • brightfield movies | not statedb |
Drosophila | ||
Flygut | • schematic illustrations • fluorescence micrographs • 3D surface models | not stated |
Virtual Fly Brain | • confocal micrographs (as virtual sections) • 3D surface models of neurons | Drosophila Anatomy Ontologyc |
Medaka | ||
Medaka Blood Vessel Atlas | • illustrations • confocal microangiographs | not stated |
Mouse | ||
Allen Developing Mouse Brain Reference Atlas | • histological sections with illustration overlays | Developing Mouse Brain Atlas ontology |
e-Mouse Atlas | • 3D reconstructions of histological sections (as virtual sections and volumes) • histological sections • OPT scans (as volumes) • illustrations of stages | EMAP anatomy ontology |
Zebrafish | ||
FishFace | • confocal micrographs (as projections) • OPT scans (as volumes) | Zebrafish Anatomy Ontology and [67] |
FishNet | • OPT scans (as virtual sections and volumes) | not stated |
Interactive Atlas of Zebrafish Vascular Anatomy | • illustrations • confocal microangiographs (as projections and volumes) | reference list on website |
ZFAP | • OPT scans (as virtual sections and volumes) | Zebrafish Anatomy Ontology |
Zebrafish Atlas | • histological sections | term list on website |