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Table 1 Parameters measured by MaggotTracker

From: An automated system for quantitative analysis of Drosophila larval locomotion

Parameter Unit Definition of Parameter
Animal shape
Body Length mm The length of the midline of the larva measured using all frames.
Body Length Contracted mm Body length measured using a subset of frames when the larval length reaches the local minimum during a stride. 1
Body Length Extended mm Body length measured using a subset of frames where the larval length reaches the local maximum during a stride. 1
Time Head Bending % Percentage of time when the larva has a head angle of over 45 degrees. 2, 3
Time Body Bending % Percentage of time when the larva has a body angle of over 45 degrees. 2, 3
Time Bending % Percentage of time when the larva has either its head or body angle over 45 degrees. 2, 3
Peristalsis movement
Speed mm/sec The positional change of the center point over time. 2, 4
Time Striding % Percentage of time when the larva is striding. 2, 3
Speed Striding mm/sec Speed measured using a subset of frames when the animal is striding. 1, 2, 4
Stride Duration sec Time duration of one stride. 1, 2
Stride Distance mm Distance traveled by the center point during one stride. 1, 2, 4
Contraction Rate mm/sec The rate of body length change during the contraction phase of a stride. 1, 2
Extension Rate mm/sec The rate of body length change during the extension phase of a stride. 1, 2
Stamina
Stride Count counts/min Total number of strides over the video length. 3
Run Distance mm Average distance traveled in a run. A run is defined as a period when the animal is striding continuously. 3
Run Duration sec Average time duration of a run. 3
Run Stride Count counts/min Average number of strides of a run. 3
Run Count counts/min Total number of runs over the video length. 3
Track
Distance mm/min Total distance traveled by the center point over the video length. 3
Direction Change % Percentage points on the track where the animal is changing its direction. 3
Time Inside % Percentage of time the animal is away from the plastic ring. 3
  1. 1 These parameters are only measured for the video segments when the animal is striding.
  2. 2 These parameters are measured in three ways: overall, inside, and outside. Overall values evaluate the whole video. Inside values evaluate the animal when it is away from the plastic. Outside values evaluate the animal when it is close to or on the plastic ring. Overall values were used by default unless otherwise specified.
  3. 3 These parameters are measured over the entire video. They have one value data point from each video. The other parameters are measured for each frame. The mean value was used for each video.
  4. 4 These parameters are measured for each of the 13 points along the midline. Values for the center point, Point 7, were used by default unless otherwise specified.