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Table 1 Parameters measured by MaggotTracker

From: An automated system for quantitative analysis of Drosophila larval locomotion

Parameter

Unit

Definition of Parameter

Animal shape

Body Length

mm

The length of the midline of the larva measured using all frames.

Body Length Contracted

mm

Body length measured using a subset of frames when the larval length reaches the local minimum during a stride. 1

Body Length Extended

mm

Body length measured using a subset of frames where the larval length reaches the local maximum during a stride. 1

Time Head Bending

%

Percentage of time when the larva has a head angle of over 45 degrees. 2, 3

Time Body Bending

%

Percentage of time when the larva has a body angle of over 45 degrees. 2, 3

Time Bending

%

Percentage of time when the larva has either its head or body angle over 45 degrees. 2, 3

Peristalsis movement

Speed

mm/sec

The positional change of the center point over time. 2, 4

Time Striding

%

Percentage of time when the larva is striding. 2, 3

Speed Striding

mm/sec

Speed measured using a subset of frames when the animal is striding. 1, 2, 4

Stride Duration

sec

Time duration of one stride. 1, 2

Stride Distance

mm

Distance traveled by the center point during one stride. 1, 2, 4

Contraction Rate

mm/sec

The rate of body length change during the contraction phase of a stride. 1, 2

Extension Rate

mm/sec

The rate of body length change during the extension phase of a stride. 1, 2

Stamina

Stride Count

counts/min

Total number of strides over the video length. 3

Run Distance

mm

Average distance traveled in a run. A run is defined as a period when the animal is striding continuously. 3

Run Duration

sec

Average time duration of a run. 3

Run Stride Count

counts/min

Average number of strides of a run. 3

Run Count

counts/min

Total number of runs over the video length. 3

Track

Distance

mm/min

Total distance traveled by the center point over the video length. 3

Direction Change

%

Percentage points on the track where the animal is changing its direction. 3

Time Inside

%

Percentage of time the animal is away from the plastic ring. 3

  1. 1 These parameters are only measured for the video segments when the animal is striding.
  2. 2 These parameters are measured in three ways: overall, inside, and outside. Overall values evaluate the whole video. Inside values evaluate the animal when it is away from the plastic. Outside values evaluate the animal when it is close to or on the plastic ring. Overall values were used by default unless otherwise specified.
  3. 3 These parameters are measured over the entire video. They have one value data point from each video. The other parameters are measured for each frame. The mean value was used for each video.
  4. 4 These parameters are measured for each of the 13 points along the midline. Values for the center point, Point 7, were used by default unless otherwise specified.