Figure 2
Zebrafish development networks according to gene expression. (A) The complete set of Zebrafish interactions currently stored within myGRN. (B) A subset of genes from A that are expressed in the liver, and the interactions between them. (C) Expansion of B to include all interaction partners, regardless of expression location. Orange coloured genes are present in (B), yellow genes are expressed in liver but do not interact with other liver expressed genes, blue genes are not expressed in liver. These networks were exported from myGRN as graphML and visualised using the yEd Graph Editor http://www.yfiles.com. Different node shapes represent gene types: triangle = signal (ligand), rectangle = transcription factor, trapezoid = receptor, circle = terminal marker. Line styles represent interaction types: solid=direct, dashed = indirect, black arrow = activation, red arrow = repression, grey diamond = unknown.