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Table 1 Tag counts for endoderm and ectoderm genes in the endoderm and ectoderm SAGE libraries.

From: A systematic screen for genes expressed in definitive endoderm by Serial Analysis of Gene Expression (SAGE)

gene symbol

tag sequence

Early Endoderm (108579)

Foregut (102972)

Hindgut (110529)

Neural tube (97364)

Anterior neuropore (103594)

Posterior neuropore (102196)

endoderm genes

Cxcr4

TGAATGAGTGTCTAGGC

5

1

6

2

2

2

Ecad

TAATGTTGCTAGAGTGA

9

9

8

0

0

1

Foxa1

TTAACGACAAAAAAAAA

5

4

1

0

1

0

Foxa2

GTGAAATCCAGGTCTCG

8

6

9

1

2

0

Foxa3

CTGCTATGCACCAAGAT

2

1

3

0

0

0

Gata4

CCTGCCCCTCCTCCACA

1

2

1

0

0

0

Gata6

TACACAATAATTTTTTT

3

6

3

0

0

0

Hhex

TATATAGCATTACTTCT

2

4

1

0

0

0

Ihh

GGAGAATTTTGGGAATG

2

0

4

0

0

0

Shh

TTCTTGGAAACCAAGAC

11

10

7

1

0

0

Sox17

CGTGTTTTCTCAATCTT

21

2

8

0

0

0

ectoderm genes

Fgf15

ACTTGTTTTCTACATTA

0

0

0

1

4

2

Hes5

TGGGAGAACACAGGCTG

0

0

0

1

3

2

Ncad

TTAATATCTTTCGTTAT

0

0

1

3

2

3

Pax6

GATTTAAGAGTTTTATC

0

0

0

4

1

1

Sox2

TATATATTTGAACTAAT

1

3

1

6

5

10

Sox3

TACCTGCCACCTGGCGG

0

0

0

3

4

3

Zic2

TGATGTTTCAGTGCTTT

0

0

0

6

4

4

Zic3

AATAACAGAAAAGTGGA

0

0

0

1

1

0

  1. The total number of tags in each library is bracketed in the column heading.