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Table 1 Overview of the blastocyst specific subtracted cDNA clones compared to known sequences in Genbank

From: Identification and expression analysis of genes associated with bovine blastocyst formation

EST Accession Number

Gene name

Function

Accession Number BlastN

% Identity

DQ347577

B. taurus γ-actin Cytoplasmic 2

Cytoskeletal protein

NM_001033618

99% 443/447

DQ347578

   

100% 237/237

DQ347579

B. taurus actinin, α 1

Cytoskeletal protein

XM_591685

99% 257/258

DQ347580

B. taurus Fibronectin 1

Cytoskeletal protein

XM874396

95% 457/478

DQ347581

H. sapiens Microtubule-actin crosslink factor 1

Cytoskeletal protein

NM_012090

88% 425/478

DQ347582

   

89% 317/354

DQ347583

B. taurus Myosin light chain prot. 6

Cytoskeletal protein

BTMYO217

99% 413/417

DQ347584

B. taurus cytokeratin 18

Cytoskeletal protein

XM_582930

99% 442/443

DQ347585

   

96% 219/228

DQ347586

B. taurus Adenin nucleotide translocator 2

Transporter activity

AB065433

97% 272/279

DQ347587

   

97% 245/259

DQ347588

   

99% 300/301

DQ347589

   

98% 297/303

DQ347590

B. taurus Ferritin heavy chain polypeptide 1

Iron storage

NM_174062

98% 171/174

DQ347591

   

99% 230/231

DQ347592

  

AF540563

100% 167/167

DQ347593

   

100% 170/170

DQ347594

   

95% 356/372

DQ347595

B. taurus Histidine triad nucleotide binding protein 1

Hydrolase

NM_175812

95% 350/366

DQ347596

   

95% 340/356

DQ347597

B. taurus coatomer protein complex, subunit ε

retrograde Golgi-to-ER transport

X76980

99% 364/366

DQ347598

B. taurus neural precursor cell expressed, developmental down-regulated 8

linkage of ubiquitin

AF227256

99% 173/174

DQ347599

H. sapiens tyrosine 3-monooxygenase

signal transduction

BC010352

91% 77/84

DQ347600

H. sapiens ATPase Na/K transporting, subunit b3

Osmoregulation

NM_001035393

99% 212/214

DQ347601

   

98% 175/178

DQ347634

B. taurus cyclin G-associated kinase

Cell cycle

NM_001046084

95% 226/236

DQ347637

   

96% 130/135

DQ347603

B. taurus elongation factor 1 α

Translation

AJ238405

89% 305/341

DQ347604

B. taurus ribosomal prot. L3

Translation

NM_174715

100% 167/167

DQ347605

B. taurus ribosomal prot. L6

 

NM_001031756

99% 133/134

DQ347606

H. sapiens ribosomal prot. L7

 

NM_001014928

99% 423/426

DQ347607

B. taurus ribosomal prot. L10/QM

 

NM_174760

99% 166/167

DQ347608

B. taurus ribosomal prot. L17

 

AB099021

96% 256/265

DQ347609

B. taurus ribosomal prot. L23

 

NM_001035014

99% 330/331

DQ347610

B. taurus ribosomal prot. S5

 

NM_001015531

98% 465/470

DQ347611

H. sapiens ribosomal prot. S11

 

NM_001024568

99% 289/290

DQ347613

B. taurus ribosomal prot S8

 

NM_001025317

99% 333/334

DQ347612

B. taurus ribosomal prot. S12

 

BC102500

98% 386/390

DQ347614

B. taurus ribosomal prot. 40S S26-2-like

 

NM_001015561

98% 331/336

DQ347615

B. taurus ribosomal prot. S27

 

XM_880953

99% 287/289

DQ347616

B. taurus ribosomal prot. large P2

 

NM_174788

98% 443/452

DQ347617

B. taurus U1 snRNP-specific prot.

 

XM_872762

99% 331/333

DQ347602

B. taurus ATPase H+ transporter V0 subunit b

Energy metabolism

NM_001038038

100% 634/634

DQ347636

B. taurus cytochrome C oxidase 7A2

Energy metabolism

NM_175807

94%199/210

DQ347618

B. taurus mitoch. genome ATP6

Energy metabolism

AY526085

100% 251/251

DQ347619

B. taurus mitoch. genome ND4

  

99% 250/251

DQ347620

B. taurus mitoch. genome COX3

  

98% 374/381

DQ347621

B. taurus mitoch. genome COX2

  

99% 225/226

DQ347622

B. taurus mitoch. genome COX1

  

97% 260/268

DQ347623

B. taurus mitoch. genome COX3

  

98% 259/264

DQ347624

B. taurus mitoch. genome COX2

  

99% 219/220

DQ347625

B. taurus mitoch. genome COX2

  

99% 226/227

DQ347626

B. taurus mitoch. genome COX1

  

100% 240/240

DQ347627

B. taurus mitoch. genome COX2

  

99% 429/430

DQ347629

B. taurus BAC library clone rp42-147e22

Unknown

AC092858

98% 400/406

DQ347631

   

95% 141/147

DQ347628

B. taurus BAC library clone rp42-518P7

Unknown

AC129959

94% 218/230

DQ347630

   

98% 193/195

DQ347632

B. taurus BAC library clone CH240-472P12

Unknown

AC150855

90% 142/157

DQ347633

Unknown EST

Unknown

No similarity found

 

DQ347635

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