Skip to main content

Table 2 Novel synMuv B genes and genetic epistasis analysis.

From: Large-scale RNAi screens identify novel genes that interact with the C. elegans retinoblastoma pathway as well as splicing-related components with synMuv B activity

 

% of animals with 2, 3, 4 or 5 pseudovulvae

 

2

3

4

5

% of Muv

n

synMuv B activity

      

rsr-2(RNAi)

0%

0%

0%

0%

0%

445

rsr-2(RNAi); lin-15A(n767)

8.6%

1.3%

0%

0%

10%

453

rsr-2(RNAi); lin-8(n111)

1.5%

0%

0%

0%

2%

197

rsr-2(RNAi); lin-38(n751)

1.0%

0.1%

0%

0%

1%

787

rsr-2(RNAi); lin-56(n2728)

2.0%

0%

0%

0%

2%

595

rrf-3(pk1426); lsm-2(RNAi)

0%

0%

0%

0%

0%

>300

lsm-2(RNAi); lin-15A(n767)

1.5%

3.1%

1.0%

0%

6%

390

lsm-2(RNAi) 25°C

0%

0%

0%

0%

0%

220

lsm-2(RNAi); lin-15A(n767) 25°C

13.8%

42.5%

37.8%

0.5%

94%

188

lsm-2(RNAi); lin-8(n111) 25°C

14.7%

9.5%

1.0%

1.0%

26%

136

lsm-2(RNAi); lin-38(n751) 25°C

13.4%

27.4%

17.8%

0%

60%

157

lsm-2(RNAi); lin-56(n2728) 25°C

7.1%

8.2%

4.7%

0%

20%

85

rrf-3(pk1426); lsm-4(RNAi)

0%

0%

0%

0%

0%

>300

lsm-4(RNAi); lin-15A(n767)

2.4%

5.0%

0.5%

0%

8%

420

lsm-4(RNAi) 25°C

0%

0%

0%

0%

0%

149

lsm-4(RNAi); lin-15A(n767) 25°C

16.0%

40.8%

38.3%

0.6%

95%

162

lsm-4(RNAi); lin-8(n111) 25°C

11.7%

9.0%

1.4%

0%

22%

145

lsm-4(RNAi); lin-38(n751) 25°C

10.5%

45.3%

23.2%

0%

79%

95

lsm-4(RNAi); lin-56(n2728) 25°C

13.2%

14.0%

5.3%

0%

33%

114

lin-37(RNAi); lin-15A(n767)

27.6%

41.4%

24.1%

6.9%

100%

29

lin-35(RNAi); lin-15A(n767)

0%

27.5%

62.5%

10.0%

100%

40

lin-35(RNAi); lin-38(n751)

1.6%

1.6%

67.2%

22.9%

93%

61

lin-35(RNAi); lin-15A(n767) 25°C

0%

0%

33.7%

58.7%

92%

92

lin-35(RNAi); lin-8(n111) 25°C

1.2%

7.1%

29.4%

0%

37%

85

lin-35(RNAi); lin-56(n2728) 25°C

1.2%

6.1%

37.8%

45.1%

89%

82

snr-1(RNAi)(L1)(MV)

0%

0%

0%

0%

0%

>200

lin-35(n2239); snr-1(RNAi)(L1)(MV)

0%

0%

0%

0%

0%

>200

snr-1(RNAi)(L1)(MV); lin-15A(n767)

9.3%

3.6%

4.3%

0.4%

18%

278

snr-1(RNAi)(L1)(JA); lin-15A(n767)

1.6%

3.2%

0%

0%

5%

62

snr-1(RNAi)(L1)(MV); lin-56(n2728)

2.4%

1.4%

0.7%

0%

5%

293

snr-1(RNAi)(L1)(MV); lin-38(n751)

3.3%

1.1%

0%

0%

4%

132

snr-2(RNAi)(L1)(MV); lin-15A(n767)

1.0%

1.0%

0%

0%

2%

93

snr-3(RNAi)(L1)(MV)

0%

0%

0%

0%

0%

>200

lin-35(n2239); snr-3(RNAi)(L1)(MV)

0%

0%

0%

0%

0%

>200

snr-3(RNAi)(L1)(MV); lin-15A(n767)

14.0%

4.0%

0.5%

0%

19%

221

snr-3(RNAi)(L1)(MV); lin-38(n751)

2.4%

0.8%

0%

0%

3%

126

snr-4(RNAi)(L1)(MV); lin-15A(n767)

9.7%

4.8%

1.2%

0%

16%

83

snr-4(RNAi)(L1)(JA); lin-15A(n767)

7.1%

3.2%

0%

0%

10%

156

snr-5(RNAi)(L1)(MV); lin-15A(n767)

1.3%

1.3%

0.6%

0%

3%

158

snr-6(RNAi)(L1)(MV); lin-15A(n767)

4.7%

3.5%

0%

0%

8%

257

snr-7(RNAi)(L1)(MV); lin-15A(n767)

10.7%

7.1%

2.2%

0%

20%

140

EGF/RAS/MAPK epistasis

      

rsr-2(RNAi); let-23(sy97); lin-15A(n767)

0%

0%

0%

0%

0%

99

rsr-2(RNAi); let-60(n1876); lin-15A(n767)

0%

0%

0%

0%

0%

43

rsr-2(RNAi); lin-3(n378); lin-15A(n767)

5.0%

1.3%

0%

0%

6%

80

let-60(n1876); lsm-2(RNAi); lin-15A(n767)

0%

0%

0%

0%

0%

34

lin-3(n378); lsm-2(RNAi); lin-15A(n767)

1.6%

0%

0%

0%

2%

250

lsm-4(RNAi); let-60(n1876); lin-15A(n767)

0%

0%

0%

0%

0%

64

lsm-4(RNAi); lin-3(n378); lin-15A(n767)

2.7%

0.6%

0%

0%

3%

180

lin-35(RNAi); let-23(sy97); lin-15A(n767)

0%

0%

0%

0%

0%

58

lin-35(RNAi); let-60(n1876); lin-15A(n767)

0%

0%

0%

0%

0%

25

lin-35(RNAi); lin-3(n378); lin-15A(n767)

3.2%

15.9%

74.6%

6.3%

100%

63

  1. RNAi experiments were performed at 20°C on young adults unless indicated otherwise. Multivulva animals were scored in the next generation after 5, 7 and 9 days. All synMuv A mutants were 0% Muv at 20°C and 25°C. (L1): feeding RNAi started at first larval stage. (JA): clone from RNAi library generated by the Ahringer lab. (MV): clone from RNAi library generated by the Vidal lab.