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Table 2 Summary of EST showing differences in expression during myogenesis between Pietrain and Duroc breeds of pigs

From: Identification of genes differentially expressed during prenatal development of skeletal muscle in two pig breeds differing in muscularity

EST/Clone Accession number Identity1 Species Accession number Similarity Function Period group Expression pattern2
qR15A1#2 EH792605 Androgen receptor N-terminal-interacting protein (ARNIP) Human AF247041 254/267 (95%) metabolism 2 D-1-D-0-0-0-0
qR15A1#3 EH792606 NADP dependent leukotriene b4 12-hydroxydehydrogenase (LTB4DH) Porcine NM_214385 235/243 (96%) metabolism 2 D-1-D-0-0-0-0
qR8A1 EH792608 Unknown     other, unknown 2 D-D-D-0-0-0-0
bR9C1 EH792594 Unknown     other, unknown 2 D-D-D-D-0-0-0
qR24C1 EH792607 Pan troglodytes chromosome 22 clone:RP43-009O02 Chimp BS000013 92/112 (82%) other, unknown 2 D-1-D-0-0-0-0
bR4D1 EH792593 Unknown     other, unknown 2 0-1-D-0-0-0-0
bR13B4 EH792592 GATA binding protein 3 (GATA3) Porcine DQ450901 189/193 (97%) regulation of transcription 2 1-1-D-0-0-0-0
qR15A1#1 EH792604 DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 (DDX17) Human NM_030881 230/259 (88%) RNA/DNA metabolism 2 D-1-D-0-0-0-0
bR21D1 EH792610 Immunoglobulin superfamily, member 1 (IGSF1) Canine XM_538173 199/212 (93%) cell adhesion, ECM 3 0-0-0-0-0-P-P
bR2B1 EH792611 Unknown     other, unknown 3 0-0-0-1-1-P-0
bR8B2 EH792613 Unknown     other, unknown 3 0-0-0-0-0-P-P
bR18D1 EH792609 Unknown     other, unknown 3 0-0-0-0-D-1-1
bR7D1 EH792612 RAB6 interacting protein 2 (RAB6IP2) Human NM_178037 268/287 (93%) regulation of transcription 3 0-0-0-0-D-1-1
qR7B2 EH792615 Rap guanine nucleotide exchange factor (GEF) 5 (RAPGEF5) Human BC039203 62/73 (84%) signal transduction 3 0-0-0-P-P-P-P
qR3B1 EH792655 EST [Laminin, beta 1 (LAMB1)] Porcine BE030491 171/174 (98%) cell adhesion, ECM 4 0-P-P-P-1-1-1
qR4D2 EH792658 EST [Sarcospan (SSPN)] Porcine BX924101 469/475 (98%) cell adhesion, ECM 4 0-P-P-1-1-1-1
qR19D1 EH792650 SPARC-like 1 (SPARCL1) Human NM_004684 198/236 (83%) cell adhesion, ECM 4 0-0-P-P-P-P-P
qR22D1 EH792652 Tight junction protein 1 (TJP1) Human NM_003257 447/486 (91%) cell adhesion, ECM 4 0-0-P-P-P-0-0
bR24D1 EH792623 Secreted phosphoprotein 1 (SPP1) Porcine AJ237667 125/126 (99%) cell adhesion, ECM 4 0-0-D-D-D-D-D
qR14A1#2 EH792645 Spectrin repeat containing, nuclear envelope 2 (SYNE2) Human BC042134 88/100 (88%) cell structure 4 0-0-1-D-D-D-D
qR1A1 EH792651 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 10 (NDUFA10) Bovine NM_176655 84/90 (93%) metabolism 4 0-0-1-1-1-1-D
qR14A1#1 EH792644 Latexin (LXN) Human BC008438 133/151 (88%) metabolism 4 0-0-1-D-D-D-D
bR13B8 EH792618 Nebulin-related anchoring protein (NRAP) Porcine DQ157553 199/200 (99%) myofibrill assembly 4 0-P-P-P-P-P-0
bR24A1 EH792621 Unknown     other, unknown 4 0-P-P-P-P-P-P
qR4B1 EH792656 Unknown     other, unknown 4 0-P-P-P-1-1-1
qR24B1 EH792653 Metastasis associated lung adenocarcinoma transcript 1 (MALAT1) Human NR_002819 72/79 (91%) other, unknown 4 0-0-P-P-1-1-1
qR25B3 EH792654 Unknown     other, unknown 4 0-0-P-P-P-P-P
qR5C1 EH792659 EST Porcine CJ014638 195/228 (85%) other, unknown 4 0-0-P-P-1-1-P
qR15C1 EH792647 Unknown     other, unknown 4 0-D-P-P-P-0-0
qR19C1 EH792649 Unknown     other, unknown 4 0-0-P-P-1-1-1
qR4D1 EH792657 Unknown     other, unknown 4 0-P-P-P-1-1-1
bR15D1 EH792619 EST Porcine AJ956602 45/48 (93%) other, unknown 4 0-0-P-P-P-P-P
bR22D2 EH792620 EST Bovine AW344601 49/52 (94%) other, unknown 4 0-0-P-P-1-1-1
bR13B10 EH792617 EST [SMAD family member 7 (SMAD7)] Bovine DV922547 61/67 (91%) regulation of transcription 4 0-P-P-0-P-P-P
bR24C2 EH792622 EST [SET binding protein 1 (SETBP1)] Porcine BP172194 369/373 (98%) regulation of transcription 4 0-P-P-P-P-P-P
qR14C2 EH792646 Heterogeneous nuclear ribonucleoprotein D (HNRPD) Murine AK077409 265/279 (94%) RNA/DNA metabolism 4 0-0-P-P-P-P-P
qR17B1 EH792648 Homo sapiens 12 BAC RP11-729I10 [ABCC9] Human AC008250 75/87 (86%) transport 4 0-0-D-D-D-D-D
bR22B1 EH792663 Platelet-derived growth factor receptor, alpha polypeptide (PDGFRA) Human NM_006206 252/287 (87%) cell proliferation 5 D-D-D-D-D-D-D
qR7B1 EH792668 SMC6 structural maintenance of chromosomes 6-like 1 (SMC6L1) Canine XM_532882 169/176 (96%) other, unknown 5 D-1-P-P-1-1-1
bR26B1 EH792664 Unknown     other, unknown 5 P-P-P-P-1-P-1
qR10D1 EH792666 cDNA FLJ26539 fis [Bicaudal C homolog 1 (BICC1)] Human AK130049 65/71 (91%) regulation of transcription 5 P-P-P-P-P-P-P
bR10D1 DQ631863 cDNA FLJ26539 fis [Bicaudal C homolog 1 (BICC1)] Human AK130049 65/71 (91%) regulation of transcription 5 D-D-D-D-D-D-D
bR12D1 EH792661 EST Porcine AJ955354 51/51 (100%) other, unknown 5 P-P-P-P-P-P-P
qR20D1 EH792667 EST Porcine DV230345 71/71 (100%) other, unknown 5 P-P-P-P-P-P-P
bR2B2 EH792665 Jumonji domain containing 2A (JMJD2A) Canine XM_539647 278/305 (91%) regulation of transcription 5 P-1-1-1-1-1-1
bR13A3 EH792662 Poly(A) polymerase gamma (PAPOLG) Bovine XM_607511 217/229 (94%) RNA/DNA metabolism 5 D-D-D-D-D-D-D
  1. 1In square brackets the identity derived by cross-species megaBLAST search of the human genome sequence is indicated
  2. 2Binary coding of the differential display RT-PCR pattern (1-present in both breeds, 0-absent in both breeds, P-Present/More intense in Pietrain, D- Present/More intense in Duroc)