Table 2 Summary of EST showing differences in expression during myogenesis between Pietrain and Duroc breeds of pigs
EST/Clone | Accession number | Identity1 | Species | Accession number | Similarity | Function | Period group | Expression pattern2 |
|---|---|---|---|---|---|---|---|---|
qR15A1#2 | EH792605 | Androgen receptor N-terminal-interacting protein (ARNIP) | Human | AF247041 | 254/267 (95%) | metabolism | 2 | D-1-D-0-0-0-0 |
qR15A1#3 | EH792606 | NADP dependent leukotriene b4 12-hydroxydehydrogenase (LTB4DH) | Porcine | NM_214385 | 235/243 (96%) | metabolism | 2 | D-1-D-0-0-0-0 |
qR8A1 | EH792608 | Unknown | other, unknown | 2 | D-D-D-0-0-0-0 | |||
bR9C1 | EH792594 | Unknown | other, unknown | 2 | D-D-D-D-0-0-0 | |||
qR24C1 | EH792607 | Pan troglodytes chromosome 22 clone:RP43-009O02 | Chimp | BS000013 | 92/112 (82%) | other, unknown | 2 | D-1-D-0-0-0-0 |
bR4D1 | EH792593 | Unknown | other, unknown | 2 | 0-1-D-0-0-0-0 | |||
bR13B4 | EH792592 | GATA binding protein 3 (GATA3) | Porcine | DQ450901 | 189/193 (97%) | regulation of transcription | 2 | 1-1-D-0-0-0-0 |
qR15A1#1 | EH792604 | DEAD (Asp-Glu-Ala-Asp) box polypeptide 17 (DDX17) | Human | NM_030881 | 230/259 (88%) | RNA/DNA metabolism | 2 | D-1-D-0-0-0-0 |
bR21D1 | EH792610 | Immunoglobulin superfamily, member 1 (IGSF1) | Canine | XM_538173 | 199/212 (93%) | cell adhesion, ECM | 3 | 0-0-0-0-0-P-P |
bR2B1 | EH792611 | Unknown | other, unknown | 3 | 0-0-0-1-1-P-0 | |||
bR8B2 | EH792613 | Unknown | other, unknown | 3 | 0-0-0-0-0-P-P | |||
bR18D1 | EH792609 | Unknown | other, unknown | 3 | 0-0-0-0-D-1-1 | |||
bR7D1 | EH792612 | RAB6 interacting protein 2 (RAB6IP2) | Human | NM_178037 | 268/287 (93%) | regulation of transcription | 3 | 0-0-0-0-D-1-1 |
qR7B2 | EH792615 | Rap guanine nucleotide exchange factor (GEF) 5 (RAPGEF5) | Human | BC039203 | 62/73 (84%) | signal transduction | 3 | 0-0-0-P-P-P-P |
qR3B1 | EH792655 | EST [Laminin, beta 1 (LAMB1)] | Porcine | BE030491 | 171/174 (98%) | cell adhesion, ECM | 4 | 0-P-P-P-1-1-1 |
qR4D2 | EH792658 | EST [Sarcospan (SSPN)] | Porcine | BX924101 | 469/475 (98%) | cell adhesion, ECM | 4 | 0-P-P-1-1-1-1 |
qR19D1 | EH792650 | SPARC-like 1 (SPARCL1) | Human | NM_004684 | 198/236 (83%) | cell adhesion, ECM | 4 | 0-0-P-P-P-P-P |
qR22D1 | EH792652 | Tight junction protein 1 (TJP1) | Human | NM_003257 | 447/486 (91%) | cell adhesion, ECM | 4 | 0-0-P-P-P-0-0 |
bR24D1 | EH792623 | Secreted phosphoprotein 1 (SPP1) | Porcine | AJ237667 | 125/126 (99%) | cell adhesion, ECM | 4 | 0-0-D-D-D-D-D |
qR14A1#2 | EH792645 | Spectrin repeat containing, nuclear envelope 2 (SYNE2) | Human | BC042134 | 88/100 (88%) | cell structure | 4 | 0-0-1-D-D-D-D |
qR1A1 | EH792651 | NADH dehydrogenase (ubiquinone) 1 alpha subcomplex 10 (NDUFA10) | Bovine | NM_176655 | 84/90 (93%) | metabolism | 4 | 0-0-1-1-1-1-D |
qR14A1#1 | EH792644 | Latexin (LXN) | Human | BC008438 | 133/151 (88%) | metabolism | 4 | 0-0-1-D-D-D-D |
bR13B8 | EH792618 | Nebulin-related anchoring protein (NRAP) | Porcine | DQ157553 | 199/200 (99%) | myofibrill assembly | 4 | 0-P-P-P-P-P-0 |
bR24A1 | EH792621 | Unknown | other, unknown | 4 | 0-P-P-P-P-P-P | |||
qR4B1 | EH792656 | Unknown | other, unknown | 4 | 0-P-P-P-1-1-1 | |||
qR24B1 | EH792653 | Metastasis associated lung adenocarcinoma transcript 1 (MALAT1) | Human | NR_002819 | 72/79 (91%) | other, unknown | 4 | 0-0-P-P-1-1-1 |
qR25B3 | EH792654 | Unknown | other, unknown | 4 | 0-0-P-P-P-P-P | |||
qR5C1 | EH792659 | EST | Porcine | CJ014638 | 195/228 (85%) | other, unknown | 4 | 0-0-P-P-1-1-P |
qR15C1 | EH792647 | Unknown | other, unknown | 4 | 0-D-P-P-P-0-0 | |||
qR19C1 | EH792649 | Unknown | other, unknown | 4 | 0-0-P-P-1-1-1 | |||
qR4D1 | EH792657 | Unknown | other, unknown | 4 | 0-P-P-P-1-1-1 | |||
bR15D1 | EH792619 | EST | Porcine | AJ956602 | 45/48 (93%) | other, unknown | 4 | 0-0-P-P-P-P-P |
bR22D2 | EH792620 | EST | Bovine | AW344601 | 49/52 (94%) | other, unknown | 4 | 0-0-P-P-1-1-1 |
bR13B10 | EH792617 | EST [SMAD family member 7 (SMAD7)] | Bovine | DV922547 | 61/67 (91%) | regulation of transcription | 4 | 0-P-P-0-P-P-P |
bR24C2 | EH792622 | EST [SET binding protein 1 (SETBP1)] | Porcine | BP172194 | 369/373 (98%) | regulation of transcription | 4 | 0-P-P-P-P-P-P |
qR14C2 | EH792646 | Heterogeneous nuclear ribonucleoprotein D (HNRPD) | Murine | AK077409 | 265/279 (94%) | RNA/DNA metabolism | 4 | 0-0-P-P-P-P-P |
qR17B1 | EH792648 | Homo sapiens 12 BAC RP11-729I10 [ABCC9] | Human | AC008250 | 75/87 (86%) | transport | 4 | 0-0-D-D-D-D-D |
bR22B1 | EH792663 | Platelet-derived growth factor receptor, alpha polypeptide (PDGFRA) | Human | NM_006206 | 252/287 (87%) | cell proliferation | 5 | D-D-D-D-D-D-D |
qR7B1 | EH792668 | SMC6 structural maintenance of chromosomes 6-like 1 (SMC6L1) | Canine | XM_532882 | 169/176 (96%) | other, unknown | 5 | D-1-P-P-1-1-1 |
bR26B1 | EH792664 | Unknown | other, unknown | 5 | P-P-P-P-1-P-1 | |||
qR10D1 | EH792666 | cDNA FLJ26539 fis [Bicaudal C homolog 1 (BICC1)] | Human | AK130049 | 65/71 (91%) | regulation of transcription | 5 | P-P-P-P-P-P-P |
bR10D1 | DQ631863 | cDNA FLJ26539 fis [Bicaudal C homolog 1 (BICC1)] | Human | AK130049 | 65/71 (91%) | regulation of transcription | 5 | D-D-D-D-D-D-D |
bR12D1 | EH792661 | EST | Porcine | AJ955354 | 51/51 (100%) | other, unknown | 5 | P-P-P-P-P-P-P |
qR20D1 | EH792667 | EST | Porcine | DV230345 | 71/71 (100%) | other, unknown | 5 | P-P-P-P-P-P-P |
bR2B2 | EH792665 | Jumonji domain containing 2A (JMJD2A) | Canine | XM_539647 | 278/305 (91%) | regulation of transcription | 5 | P-1-1-1-1-1-1 |
bR13A3 | EH792662 | Poly(A) polymerase gamma (PAPOLG) | Bovine | XM_607511 | 217/229 (94%) | RNA/DNA metabolism | 5 | D-D-D-D-D-D-D |