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Table 1 Summary of EST showing stage-associated differential expression during porcine myogenesis

From: Identification of genes differentially expressed during prenatal development of skeletal muscle in two pig breeds differing in muscularity

EST/Clone Accession number Identity1 Species Accession number Similarity Function Period group Expression pattern2
bS9C3 EH792591 Syndecan 3 (SDC3) Bovine XM_870523 106/127 (83%) cell adhesion, ECM 1 1-1-0-0-0-0-0
bS17A2 EH792585 Ribosomal protein L37a (RPL37A) Canine AY197363.1 146/172 (84%) metabolism 1 0-1 > 1-1-1-1-1
bS24A4 EH792589 Glutamate dehydrogenase 1 (GLUD1) Human X67491.1 157/173 (90%) metabolism 1 1-1-0-0-0-0-0
bS9B1 EH792590 EST Porcine BE235673 237/283 (83%) other, unknown 1 1-0-0-0-0-0-0
bS17C2 EH792586 Unknown     other, unknown 1 0-1-0-0-0-0-0
bS17D3 EH792587 EST Bovine CB169367 146/169 (86%) other, unknown 1 0-1-0-0-0-0-0
bS18D2 EH792588 Unknown     other, unknown 1 1-1-0-0-0-0-0
bS8D1 EH792602 ATG3 autophagy related 3 homolog (S. cerevisiae) (ATG3) Human NM_022488 132/146 (90%) cell death, autophagy 2 0-1-1-0-0-0-0
bS9C4 EH792603 EST, [Insulin-like growth factor binding protein-like 1 (IGFBPL1)] Porcine CK465405 202/205 (98%) cell proliferation 2 0-1 > 1-0-0-0-0
bS24D3#2 EH792596 Non-metastatic cells 1, protein (NM23A) expressed in (NME1) Human NM_198175.1 333/387 (86%) cell proliferation 2 1-1-1-1 > 1-1-1
bS2B3#1 EH792598 Mitochondrion, [NADH dehydrogenase subunit 4L (ND4L)] Porcine AY334492 146/146 (100%) metabolism 2 0-1-1-1-0-0-0
bS2B3#2 EH792599 Signal sequence receptor, gamma (SSR3) Human NM_007107 82/90 (91%) other, unknown 2 0-1-1-1-0-0-0
bS2B4 EH792600 5'-nucleotidase domain containing 2 (NT5DC2) Human BC014550.1 120/130 (92%) other, unknown 2 0-1-1-1-0-0-0
bS2B1 EH792597 Unknown     other, unknown 2 0-1-1-1-0-0-0
bS24D3#1 EH792595 EST Porcine BG835728 122/123 (99%) other, unknown 2 1-1-1-1 > 1-1-1
bS3D7 EH792601 High mobility group AT-hook 2 (HMGA2) Human AF326972 198/235 (84%) regulation of transcription 2 0-1 > 1 > 1-1-1-1
bS9C7 EH792614 Homo sapiens genomic DNA, chromosome 11q, clone:CTD-2011F17, [UV radiation resistance associated gene (UVRAG)] Human AP002340 58/67 (86%) cell death, autophagy 3 0-0-0-0-1-1-1
qS24D2 EH792616 Tropomyosin 1, alpha (TPM1) Porcine X66274.1 373/376 (99%) myofibrill assembly 3 0-1-1 < 1-1-1-1
bS15C2 EH792628 TIMP metallopeptidase inhibitor 2 (TIMP2) Porcine AF156030 146/178 (82%) cell adhesion, ECM 4 0-0-1-1-1-1-1
bS19C1 EH792632 Immunoglobulin superfamily, member 1 (IGSF1) Canine XM_538173.1 351/391 (89%) cell adhesion, ECM 4 0-1 < 1-1-1-1-1
bS3D8 EH792642 Actin, alpha, cardiac muscle (ACTC) Human NM_005159.3 172/184 (93%) cell structure 4 0-1-1-1-1-1-1
bS14D2 EH792627 Cofilin 2, muscle (CFL2) Human NM_138638.1 128/139 (92%) cell structure 4 0-0-1-1-1-1-1
bS20A3 EH792635 Myosin, heavy polypeptide 1, skeletal muscle, adult (MYH1) Porcine AB025262 237/245 (96%) myofibrill assembly 4 0-0-1-1-1-1-1
bS1B3 EH792633 Troponin I type 2, skeletal, fast (TNNI2) Porcine NM_001032359 50/51 (98%) myofibrill assembly 4 0-0-1-1-1-1-1
bS18B1 EH792631 Myopalladin (MYPN) Canine XM_546131.1 96/100 (96%) myofibrill assembly 4 0-0-1-1-1-1-1
bS14C4 EH792626 Myosin, heavy polypeptide 3, skeletal muscle, embryonic (MYH3) Bovine AB090155.1 292/312 (93%) myofibrill assembly 4 0-1 < 1-1-1-1-1
bS15C4 EH792629 Myosin, heavy polypeptide 2 (MYH2) Porcine NM_214136.1 249/270 (92%) myofibrill assembly 4 0-0-1-1-1 > 1 > 1
qS4D7 EH792660 Titin (TTN) Human NM_003319.2 318/353 (90%) myofibrill assembly 4 0-0-1 < 1 < 1-1-1
bS4B3 EH792643 Unknown     other, unknown 4 0-0-1-1-1-1-1
bS22B1#1 EH792636 EST [Chromosome 6 open reading frame 89 (C6orf89)] Porcine BP142021 147/151 (97%) other, unknown 4 0-0-1-1-1-1-1
bS22B1#2 EH792637 Metastasis associated lung adenocarcinoma transcript 1 (MALAT1) Human NR_002819 204/240 (85%) other, unknown 4 0-0-1-1-1-1-1
bS26B3 EH792640 EST Porcine BX918881 52/55 (94%) other, unknown 4 0-0-1-1-1-1-1
bS22C2#1 EH792638 EST Porcine BQ599825 98/106 (92%) other, unknown 4 0-1 < 1-1-1-1-1
bS22C2#2 EH792639 EST Porcine CB473363 90/105 (85%) other, unknown 4 0-1 < 1-1-1-1-1
bS12D1 EH792624 EST Porcine CV866720 191/204 (93%) other, unknown 4 0-1 < 1-1-1-1-1
bS17B3 EH792630 High-mobility group nucleosome binding domain 1 (HMGN1) Canine BX641076 292/308 (94%) regulation of transcription 4 0-1 < 1 < 1 < 1 < 1 < 1
bS14C2 EH792625 DEP domain containing 5 (DEPDC5) Human BC057797.1 189/206 (91%) signal transduction 4 0-0-1-1-1-1-1
bS20A2 EH792634 ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1 (ATP5C1) Bovine XM_873667 177/195 (90%) transport 4 0-0-1-1-1-1-1
bS2D1 EH792641 Hemoglobin, beta (HBB) Porcine X86791 191/197 (96%) transport 4 0-1 < 1-1-1-1-1
qS20A1 EH792670 Mitochondrion, [NADH-ubiquinone oxidoreductase chain2 (ND2)] Rabbit AJ012536 237/240 (98%) metabolism 5 1-1 > 1 > 1 > 1 > 1 > 1
qS15D1 EH792669 Ataxin 10 (ATXN10) Porcine AY550076 169/193 (87%) other, unknown 5 1 > 1 > 1 > 1 > 1 > 1-1
  1. 1In square brackets the identity derived by cross-species megaBLAST search of the human genome sequence is indicated
  2. 2 Binary coding of the differential display RT-PCR pattern (1-present, 0-absent)