Table 1 Summary of EST showing stage-associated differential expression during porcine myogenesis
EST/Clone | Accession number | Identity1 | Species | Accession number | Similarity | Function | Period group | Expression pattern2 |
|---|---|---|---|---|---|---|---|---|
bS9C3 | EH792591 | Syndecan 3 (SDC3) | Bovine | XM_870523 | 106/127 (83%) | cell adhesion, ECM | 1 | 1-1-0-0-0-0-0 |
bS17A2 | EH792585 | Ribosomal protein L37a (RPL37A) | Canine | AY197363.1 | 146/172 (84%) | metabolism | 1 | 0-1 > 1-1-1-1-1 |
bS24A4 | EH792589 | Glutamate dehydrogenase 1 (GLUD1) | Human | X67491.1 | 157/173 (90%) | metabolism | 1 | 1-1-0-0-0-0-0 |
bS9B1 | EH792590 | EST | Porcine | BE235673 | 237/283 (83%) | other, unknown | 1 | 1-0-0-0-0-0-0 |
bS17C2 | EH792586 | Unknown | other, unknown | 1 | 0-1-0-0-0-0-0 | |||
bS17D3 | EH792587 | EST | Bovine | CB169367 | 146/169 (86%) | other, unknown | 1 | 0-1-0-0-0-0-0 |
bS18D2 | EH792588 | Unknown | other, unknown | 1 | 1-1-0-0-0-0-0 | |||
bS8D1 | EH792602 | ATG3 autophagy related 3 homolog (S. cerevisiae) (ATG3) | Human | NM_022488 | 132/146 (90%) | cell death, autophagy | 2 | 0-1-1-0-0-0-0 |
bS9C4 | EH792603 | EST, [Insulin-like growth factor binding protein-like 1 (IGFBPL1)] | Porcine | CK465405 | 202/205 (98%) | cell proliferation | 2 | 0-1 > 1-0-0-0-0 |
bS24D3#2 | EH792596 | Non-metastatic cells 1, protein (NM23A) expressed in (NME1) | Human | NM_198175.1 | 333/387 (86%) | cell proliferation | 2 | 1-1-1-1 > 1-1-1 |
bS2B3#1 | EH792598 | Mitochondrion, [NADH dehydrogenase subunit 4L (ND4L)] | Porcine | AY334492 | 146/146 (100%) | metabolism | 2 | 0-1-1-1-0-0-0 |
bS2B3#2 | EH792599 | Signal sequence receptor, gamma (SSR3) | Human | NM_007107 | 82/90 (91%) | other, unknown | 2 | 0-1-1-1-0-0-0 |
bS2B4 | EH792600 | 5'-nucleotidase domain containing 2 (NT5DC2) | Human | BC014550.1 | 120/130 (92%) | other, unknown | 2 | 0-1-1-1-0-0-0 |
bS2B1 | EH792597 | Unknown | other, unknown | 2 | 0-1-1-1-0-0-0 | |||
bS24D3#1 | EH792595 | EST | Porcine | BG835728 | 122/123 (99%) | other, unknown | 2 | 1-1-1-1 > 1-1-1 |
bS3D7 | EH792601 | High mobility group AT-hook 2 (HMGA2) | Human | AF326972 | 198/235 (84%) | regulation of transcription | 2 | 0-1 > 1 > 1-1-1-1 |
bS9C7 | EH792614 | Homo sapiens genomic DNA, chromosome 11q, clone:CTD-2011F17, [UV radiation resistance associated gene (UVRAG)] | Human | AP002340 | 58/67 (86%) | cell death, autophagy | 3 | 0-0-0-0-1-1-1 |
qS24D2 | EH792616 | Tropomyosin 1, alpha (TPM1) | Porcine | X66274.1 | 373/376 (99%) | myofibrill assembly | 3 | 0-1-1 < 1-1-1-1 |
bS15C2 | EH792628 | TIMP metallopeptidase inhibitor 2 (TIMP2) | Porcine | AF156030 | 146/178 (82%) | cell adhesion, ECM | 4 | 0-0-1-1-1-1-1 |
bS19C1 | EH792632 | Immunoglobulin superfamily, member 1 (IGSF1) | Canine | XM_538173.1 | 351/391 (89%) | cell adhesion, ECM | 4 | 0-1 < 1-1-1-1-1 |
bS3D8 | EH792642 | Actin, alpha, cardiac muscle (ACTC) | Human | NM_005159.3 | 172/184 (93%) | cell structure | 4 | 0-1-1-1-1-1-1 |
bS14D2 | EH792627 | Cofilin 2, muscle (CFL2) | Human | NM_138638.1 | 128/139 (92%) | cell structure | 4 | 0-0-1-1-1-1-1 |
bS20A3 | EH792635 | Myosin, heavy polypeptide 1, skeletal muscle, adult (MYH1) | Porcine | AB025262 | 237/245 (96%) | myofibrill assembly | 4 | 0-0-1-1-1-1-1 |
bS1B3 | EH792633 | Troponin I type 2, skeletal, fast (TNNI2) | Porcine | NM_001032359 | 50/51 (98%) | myofibrill assembly | 4 | 0-0-1-1-1-1-1 |
bS18B1 | EH792631 | Myopalladin (MYPN) | Canine | XM_546131.1 | 96/100 (96%) | myofibrill assembly | 4 | 0-0-1-1-1-1-1 |
bS14C4 | EH792626 | Myosin, heavy polypeptide 3, skeletal muscle, embryonic (MYH3) | Bovine | AB090155.1 | 292/312 (93%) | myofibrill assembly | 4 | 0-1 < 1-1-1-1-1 |
bS15C4 | EH792629 | Myosin, heavy polypeptide 2 (MYH2) | Porcine | NM_214136.1 | 249/270 (92%) | myofibrill assembly | 4 | 0-0-1-1-1 > 1 > 1 |
qS4D7 | EH792660 | Titin (TTN) | Human | NM_003319.2 | 318/353 (90%) | myofibrill assembly | 4 | 0-0-1 < 1 < 1-1-1 |
bS4B3 | EH792643 | Unknown | other, unknown | 4 | 0-0-1-1-1-1-1 | |||
bS22B1#1 | EH792636 | EST [Chromosome 6 open reading frame 89 (C6orf89)] | Porcine | BP142021 | 147/151 (97%) | other, unknown | 4 | 0-0-1-1-1-1-1 |
bS22B1#2 | EH792637 | Metastasis associated lung adenocarcinoma transcript 1 (MALAT1) | Human | NR_002819 | 204/240 (85%) | other, unknown | 4 | 0-0-1-1-1-1-1 |
bS26B3 | EH792640 | EST | Porcine | BX918881 | 52/55 (94%) | other, unknown | 4 | 0-0-1-1-1-1-1 |
bS22C2#1 | EH792638 | EST | Porcine | BQ599825 | 98/106 (92%) | other, unknown | 4 | 0-1 < 1-1-1-1-1 |
bS22C2#2 | EH792639 | EST | Porcine | CB473363 | 90/105 (85%) | other, unknown | 4 | 0-1 < 1-1-1-1-1 |
bS12D1 | EH792624 | EST | Porcine | CV866720 | 191/204 (93%) | other, unknown | 4 | 0-1 < 1-1-1-1-1 |
bS17B3 | EH792630 | High-mobility group nucleosome binding domain 1 (HMGN1) | Canine | BX641076 | 292/308 (94%) | regulation of transcription | 4 | 0-1 < 1 < 1 < 1 < 1 < 1 |
bS14C2 | EH792625 | DEP domain containing 5 (DEPDC5) | Human | BC057797.1 | 189/206 (91%) | signal transduction | 4 | 0-0-1-1-1-1-1 |
bS20A2 | EH792634 | ATP synthase, H+ transporting, mitochondrial F1 complex, gamma polypeptide 1 (ATP5C1) | Bovine | XM_873667 | 177/195 (90%) | transport | 4 | 0-0-1-1-1-1-1 |
bS2D1 | EH792641 | Hemoglobin, beta (HBB) | Porcine | X86791 | 191/197 (96%) | transport | 4 | 0-1 < 1-1-1-1-1 |
qS20A1 | EH792670 | Mitochondrion, [NADH-ubiquinone oxidoreductase chain2 (ND2)] | Rabbit | AJ012536 | 237/240 (98%) | metabolism | 5 | 1-1 > 1 > 1 > 1 > 1 > 1 |
qS15D1 | EH792669 | Ataxin 10 (ATXN10) | Porcine | AY550076 | 169/193 (87%) | other, unknown | 5 | 1 > 1 > 1 > 1 > 1 > 1-1 |