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Table 2 Comparison of microarray data to published experiments.

From: Regulation of signaling genes by TGFβ during entry into dauer diapause in C. elegans

Gene

Method

Published difference

Fold change, this study

P value

C27H5.5/col-36

RT-PCR

L2d/dauer >> L2/L3a [64]

6.8

<0.008

C47G2.1/cut-1

Northern

L2d/dauer >> L2/L3a [65]

5.7

<0.003

C08A9.1/sod-3

Northern

present in dauer, absent in non-dauer [66]

7.8

<0.00001

T01B7.7/rol-6

Northern and slotblot

L2/L3 >> L2d/dauera [61]

-7.4

<0.00002

B0491.2/sqt-1

Northern and slotblot

L2/L3 >> L2d/dauera [61]

-7.0

<0.0002

T23G5.1/rnr-1

GFP fusion

not seen at L2d/dauer molt, seen in cells in S phase at L2/L3 molt [67]

-1.8

<0.05a

W01B6.7/col-2

Northern and slotblot

L2d/dauer >> L2/L3a [61]

2.2

<0.02

T13B5.4/col-40

RT-PCR

L2d/dauer >> L2/L3a [64]

1.1

<0.8

  1. a L2d/dauer refers to animals near the molt between these two larval stages; L2/L3 also refers to animals near the molt.
  2. b The P value for rnr-1 was calculated using only the local standard deviation because the global standard deviation was not available.