Table 5 MPSS tpm of genes reported as enriched by microarray in hESC Table 5 Tpm of genes identified as overexpressed microarray analysis of six pooled human ES cell lines. Note that most of them have high tpm values and are detected by MPSS. * – PSIP2 and PSIP1 have 3' alternate termination and distinguished by MPSS (but not by microarray); ** – PODXL: TPM for signature of class 5; 3' most signature has double palindrome and underrepresented. *** – higher expression of GDF3 was detected in other ES cells (suppl.table for BG02 and not shown). **** – expression detected in other human samples (not shown).
GB_accession | Gene Symbol | HuES_TPM |
|---|---|---|
X85372 | SNRPF | No GATC |
NM_002295 | LAMR1 | 6135 |
D23660 | RPL4 | 5269 |
NM_001002 | RPLP0 | 4656 |
NM_002520 | NPM1 | 3207 |
X69391 | RPL6 | 3745 |
M31520 | RPS24 | 3183 |
AF070600 | OK/SW-cl.56 | 2702 |
X57958 | RPL7 | 1923 |
NM_024674 | LIN-28/ | 1692 |
NM_145899 | HMGIY | 1618 |
NM_018407 | LAPTM4B | 1326 |
M94314 | RPL24 | 1279 |
X62534 | HMGB2 | 989 |
D13748 | EIF4A1 | 1070 |
NM_006086 | TUBB4 | 809 |
J04164 | IFITM1 | 788 |
X69804 | SSB | 874 |
M93651 | SET | 1323 |
D00760 | PSMA2 | 673 |
AL162079 | SLC16A1 | 991 |
AF225425 | SEMA6A | 742 |
U28386 | KPNA2 | 542 |
X74929 | KRT8 | 543 |
NM_002300 | LDHB | 527 |
M97856 | NASP | 536 |
AF311912 | SFRP2 | 457 |
AF020038 | IDH1 | 450 |
D83174 | SERPINH1 | 477 |
S74445 | CRABP1 | 437 |
NM_000165 | GJA1 | 392 |
AB040903 | TD-60 | 524 |
AF063020 | PSIP2* | 389 |
U76713 | HNRPAB | 166 |
NM_000224 | KRT18 | 302 |
NM_021144 | PSIP1* | 389 |
M94856 | FABP5 | 257 |
NM_016304 | Ribo 60S L30 | 247 |
AK094423 | HNPRA1 like | 214 |
AF055270 | HSSG1 (SFRS7) | 201 |
M77140 | GAL | 199 |
AF257659 | CALU | 100 |
AF098158 | C20orf1 | 338 |
U41387 | DDX21 | 179 |
AD001528 | SMS | 175 |
NM_006548 | IMP-2 | 177 |
AJ223953 | PTTG1 | 154 |
X54326 | EPRS | 210 |
D13627 | CCT8 | 167 |
NM_012247 | SEPHS1 | 306 |
D00762 | PSMA3 | 123 |
AF005418 | CYP26A1 | 121 |
M25753 | CCNB1 | 168 |
NM_000884 | IMPDH2 | 174 |
X16396 | MTHFD2 | 113 |
NM_005159 | ACTC | 98 |
U31814 | HDAC2 | 112 |
J04031 | MTHFD1 | 104 |
NM_006341 | MAD2L2 | 95 |
J03746 | MGST1 | 88 |
NM_020997 | LEFTB | 62 |
M74091 | CCNC | 86 |
AK001962 | BRIX | 66 |
M36981 | NME2 | 93 |
AL133611 | Novel | 63 |
X05360 | CDC2 | 62 |
AB040930 | LRRN1 | 46 |
AF071592 | KIF4A | 71 |
AF015254 | STK12 | 41 |
X14253 | TDGF1 | 37 |
AB023420 | HSPA4 | 42 |
M19309 | TNNT1 | 54 |
BC004200 | PPAT | 34 |
NM_024090 | ELOVL6 | 23 |
NM_014366 | NS | 30 |
U97519 | PODXL | 26** |
AF048722 | PITX2 | 25 |
NM_024498 | ZNF117 | 32 |
NM_001878 | CRABP2 | 24 |
X59244 | ZNF43 | 13 |
BC001068 | C20orf129 | 17 |
NM_024865 | Nanog | 15 |
NM_024900 | Jade-1 | 11 |
AB046793 | KIAA1573 | 11 |
Z26317 | DSG2 | 18 |
NM_020634 | GDF3 | 1*** |
AF070651 | ZNF257 | 0**** |
NM_016448 | RAMP | 0**** |
U88573 | NBR2 | 0**** |
AB044157 | GSH1 | 0**** |