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Table 3 List of primers used in RT-qPCR

From: Histone deacetylase expression patterns in developing murine optic nerve

Gene

Accession number

Primer

Sequence (5′ to 3′)

Product length (bp)

Slope

SE (Slope)

Efficiency (%)

SE (Efficiency)

Pearson correlation

Hdac1

NM_008228.2

Forward

TGGGGCTGGCAAAGGCAAGT

133

-3.586

±0.588

95.0%

±0.200

-0.996

Reverse

GACCACTGCACTAGGCTGGAACA

Hdac2

NM_ 008229.2

Forward

CGTACAGTCAAGGAGGCGGCAA

97

-3.361

±0.551

99.0%

±0.223

-0.996

Reverse

TGAGGCTTCATGGGATGACCCTGG

Hdac3

NM_010411.2

Forward

ACGTGCATCGTGCTCCAGTGT

150

-3.416

±0.42

98.0%

±0.163

-0.997

Reverse

AGTGTAGCCACCACCTCCCAGT

Hdac4

NM_207225.1

Forward

AGCTCTGGCAACGTCAGCACT

114

-3.347

±0.631

99.5%

±0.258

-0.993

Reverse

AAGTGGGGCGACTGAGCCTTCT

Hdac5

NM_001077696.1

Forward

ACGTAAATGTGGCGTGGACAGGA

147

-3.227

±0.264

102.0%

±0.119

-0.999

Reverse

TTCAACAGCATCAAACCCAGCGGA

Hdac6

NM_010413.3

Forward

TGGGGCTTCAAGGGCTGGATCT

148

-3.098

±0.380

105.0%

±0.192

-0.997

Reverse

TGCTCTCTGATGGCATGGAGCC

Hdac7

NM_001204275.1

Forward

GCTCAGCATGTGCATGTGGAACAC

132

-3.276

±0.520

101.0%

±0.226

-0.995

Reverse

TGAGAGCCTGGTGTGTCTGGCT

Hdac8

NM_027382.3

Forward

ATGACACCAGTGGTCGGCAA

105

-3.263

±0.656

101.5%

±0.288

-0.994

Reverse

ACGAGCCGTGTTGGCAAGGTT

Hdac9

NM_024124.3

Forward

TGCACCTTTGCCTCAGAGCACG

150

-3.373

±0.239

99.0%

±0.096

-0.999

Reverse

TGGCTGCCTGGTTGCTTCAGT

Hdac10

NM_199198.2

Forward

TAGCAGCCAAACATGCCAAGCAGA

143

-3.289

±0.329

100.5%

±0.0131

-0.998

Reverse

ATGCTCATAGCGGTGCCAAGAGAAA

Hdac11

NM_144919.2

Forward

GCTGGGAAATGGGGCAAGGTGA

134

-3.125

±0.728

104.5%

±0.358

-0.992

Reverse

AGCTCGTTGAGATAGCGCCTCGT

Sdha

NM_023281.1

Forward

GGACAGGCCACTCACTCTTAC

130

-3.493

±0.496

96.5%

±0.181

-0.997

Reverse

CACAGTGCAATGACACCACG

Srp14

NM_009273.4

Forward

TCGAGCCCGCAGAAAACA

145

-3.223

±0.373

102.0%

±0.169

-0.998

Reverse

CTCTTCTTCAGCCCGTCCAT

β2-Microglobulin

NM_009735.3

Forward

TCGCGGTCGCTTCAGTCGTC

135

  

105.1%

  
  

Reverse

CATTCTCCGGTGGGTGGCGTG

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