Table 1 Summary of gene expressed during the development of mouse embryonic limb at the three developmental stages studied
From: Analysis of the dynamics of limb transcriptomes during mouse development
Developmental stage | E.11.5 | E13.5 | E15.5 | ||
|---|---|---|---|---|---|
A | UCSC known gene | Exons | 45.45% (102020/224464) | 47.01% (105530/224464) | 48.65% (109203/224464) |
Transcripts | 24.91% (11500/46163) | 25.99% (12000/46163) | 26.23% (12113/46163) | ||
Genes | 41.17% (10074/24469) | 42.69% (10446/24469) | 44.25% (10828/24469) | ||
Gene models | Coding | 90.71% (9139/10074) | 90.5% (9454/10446) | 91.35% (9892/10828) | |
Antisense | 2.29% (231/10074) | 2.42% (253/10446) | 2.25% (244/10828) | ||
Non-coding | 6.98% (704/10074) | 7.07% (739/10446) | 6.39% (692/10828) | ||
B | Genes with intronic signal (if the gene is expressed) | 4841 (3296) | 5155 (3662) | 4660 (3259) | |
C | Intergenic regions | 7408 | 7471 | 7477 | |
Directly flanking UCSC genes | 528 (7.13%) | 526 (7.04%) | 537 (7.18%) | ||
Identifiable via ENSEMBL | 1981 (26.74%) | 1970 (26.37%) | 1994 (26.67%) | ||
Directly flanking ENSEMBL genes | 587 (7.92%) | 576 (7.71%) | 592 (7.92%) | ||
Unexplained | 4312 (58.21%) | 4399 (58.88%) | 4354 (58.23%) | ||