Skeletal muscle regeneration in Xenopus tadpoles and zebrafish larvae
© Cavaco Rodrigues et al; licensee BioMed Central Ltd. 2012
Received: 17 October 2011
Accepted: 27 February 2012
Published: 27 February 2012
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© Cavaco Rodrigues et al; licensee BioMed Central Ltd. 2012
Received: 17 October 2011
Accepted: 27 February 2012
Published: 27 February 2012
Mammals are not able to restore lost appendages, while many amphibians are. One important question about epimorphic regeneration is related to the origin of the new tissues and whether they come from mature cells via dedifferentiation and/or from stem cells. Several studies in urodele amphibians (salamanders) indicate that, after limb or tail amputation, the multinucleated muscle fibres do dedifferentiate by fragmentation and proliferation, thereby contributing to the regenerate. In Xenopus laevis tadpoles, however, it was shown that muscle fibres do not contribute directly to the tail regenerate. We set out to study whether dedifferentiation was present during muscle regeneration of the tadpole limb and zebrafish larval tail, mainly by cell tracing and histological observations.
Cell tracing and histological observations indicate that zebrafish tail muscle do not dedifferentiate during regeneration. Technical limitations did not allow us to trace tadpole limb cells, nevertheless we observed no signs of dedifferentiation histologically. However, ultrastructural and gene expression analysis of regenerating muscle in tadpole tail revealed an unexpected dedifferentiation phenotype. Further histological studies showed that dedifferentiating tail fibres did not enter the cell cycle and in vivo cell tracing revealed no evidences of muscle fibre fragmentation. In addition, our results indicate that this incomplete dedifferentiation was initiated by the retraction of muscle fibres.
Our results show that complete skeletal muscle dedifferentiation is less common than expected in lower vertebrates. In addition, the discovery of incomplete dedifferentiation in muscle fibres of the tadpole tail stresses the importance of coupling histological studies with in vivo cell tracing experiments to better understand the regenerative mechanisms.
While all vertebrates are able to repair certain injured tissues and organs, like muscle and liver, only lower vertebrates retain the ability to regrow complex appendages like fins, tails and limbs after amputation. An immense research effort has been made into uncovering the differences behind the disparity in regeneration ability between lower, regenerating vertebrates, and the non-regenerating, higher vertebrates. One of the main differences resides in the formation of the blastema, a structure composed of highly proliferative progenitors that will give rise to the new tissues. Mammals generally fail to form this structure [1–3]. In amphibians and fish, blastema formation happens right after wound healing and relies on the dedifferentiation of mature cells [4–6] and/or the activation of adult stem cells [7–10]. Dedifferentiation, or loss of differentiation characteristics followed by the acquisition of progenitor features like proliferation, was believed to provide cells with the capacity to re-differentiate into different cell lineages [11–13]. However, the blastema was recently shown to mainly contain lineage-restricted progenitors that only give rise to the same kind of tissues from which they originated [6, 8, 14–16], indicating that dedifferentiation is less extensive than previously thought [13, 17, 18].
One of the main tissues that contributes to the blastema is the skeletal muscle [4, 8, 10, 14]. Skeletal muscle is mainly composed of elongated cells called muscle fibres, or myofibres, that contract upon nervous stimuli. Muscle fibres are formed during development or regeneration by the fusion of multiple myogenic progenitor cells called myoblasts. For this reason, myofibres are multinucleated, or syncytial, cells. In addition, muscle fibres are also characterized by a highly organized internal structure, necessary for proper contraction of the muscle. The building blocks of this internal structure are the sarcomeres, and the tandem repetition of sarcomeres gives rise to long chains called myofibrils. In turn, several myofibrils are packed inside the muscle fibre with the sarcomeres perfectly aligned, which creates the characteristic striated pattern of the muscle.
Interestingly, early studies in urodeles (salamanders) showed that the striated pattern of limb muscle is lost after amputation [19, 20], indicating muscle dedifferentiation. Further studies strongly suggested that limb and tail muscle fibres were able to fragment and that the resulting mononuclear cells proliferate and contribute to the blastema [4, 21–23]. Along with muscle dedifferentiation, muscle stem cells (satellite cells) were also shown to contribute to the new muscle [7, 10, 14]. On the other hand, studies on Xenopus tail regeneration revealed that muscle fibres do not contribute to the blastema, indicating the absence of muscle dedifferentiation . Instead, muscle satellite cells were shown to be the main contributor to the new tail muscle [8, 9].
Less is known on how the skeletal muscle is regenerated in Xenopus tadpole limbs following amputation. Furthermore, there is scarce literature on fish muscle regeneration, but the general belief is that fish, like urodeles, regenerate their tissues by dedifferentiation [5, 15, 24]. We therefore investigated whether Xenopus limb and tail skeletal muscle share the same regenerative strategy (absence of dedifferentiation) and whether zebrafish larvae actually regenerate muscle by dedifferentiation. We opted for two main techniques: in vivo tracing of genetically labelled myofibres to see if they dedifferentiated/fragmented and contributed to the new muscle; and histological and gene expression analysis for the detection of dedifferentiation phenotypes. We found that myofibers from the zebrafish tail and the tadpole limb do not dedifferentiate after amputation. On contrary, histological and gene expression studies revealed an unexpected dedifferentiation phenotype in tadpole tail myofibres, similar to what was described in urodeles [19, 20, 25–28]. However, further in vivo studies indicated that the histological dedifferentiation phenotype was associated with myofibre retraction and was not resulting in fragmentation of the fibres.
As an alternative to the ERT2CreERT2 system we tested the alpha complementation of Cre subunits. This system is based on the fact that the Cre protein can be split into two inactive fragments that, when co-expressed, re-associate and restore Cre activity . For higher re-association efficiency, Cre fragments can be fused with dimerizing peptides [35, 36]. We reasoned that putting one fragment under the control of an inducible promoter (e.g. the Heat-shock promoter Hsp70) and the other under the Car promoter, the result would be the desired inducible and muscle-specific expression of Cre recombinase. Therefore, we built two new constructs (Figure 2d), one containing the N-terminal Cre fragment (nCre) under the control of the Car promoter and the second with the C-terminal Cre fragment (nlcCre) under the control of the Hsp70 promoter. We injected these two constructs together with the reporter construct, pCALNL-GFP, into Xenopus eggs to obtain triple transgenics. After heat-shock induction, some founder transgenics had many labelled tail muscle fibres, but still no labelled limb fibres. Similarly, the offspring of a founder male frog occasionally showed strong expression of GFP in trunk muscles (compare Figure 2e with 2e, arrows) but no labelling in the hindlimbs (compare Figure 2e with 2e, arrowheads). Labelling was very dispersed close to the tail tip (Figure 2f), like in "CreER" transgenics, however, the middle of the tail was reasonably labelled (Figure 2g). The inability to label limb muscle with these constructs precluded us from studying limb muscle dedifferentiation by in vivo cell tracing, so we proceeded to study it histologically.
In the limb the situation was less clear (Figure 3k-r). Stage 54 hindlimbs have very immature distal muscle, grouped in small patches and composed mainly of myoblasts and small myofibres. These small and thin myofibres have few myofibrils and sarcomeres inside their cytoplasm (Figure 3k, l, arrows). At 1 dpa, the myofibres continued to present aligned sarcomeres with no signs of dedifferentiation (Figure 3m, n, arrows). At 3 dpa, the distal muscle patches were still very immature and similar to the ones identified at 0 and 1 dpa. We continued to observe small myofibres with normal striations and no obvious dedifferentiation phenotype (Figure 3o-r), but we recognize that due to tissue immaturity, sarcomeric disorganization might be hard to identify. To obtain more information on limb and tail muscle regeneration, we performed gene expression analysis by quantitative Real Time PCR.
In the limb the situation was more complex to analyse. Because the stage 54 limb is growing quickly and more muscle is being added every day, we needed a "growth control" to compare with the 3 dpa distal stump. The growth control (GC) came from stage 54 animals that were not amputated on day 0 but were left to grow for three more days, when the proximal half of the zeugopod was collected. Analogous regions were collected for 0 dpa and 3 dpa. Comparing gene expression between 0 dpa and 3 dpa zeugopods, we found no differential expression of myod, myogenin and car (Figure 4b), indicating the absence of dedifferentiation. The expression of myh4 slightly increased, but the change was not statistically significant (p value = 0.34). However, when we compared the 3 dpa tissue with the GC, we observed that the regenerating tissue has a 2- to 3-fold lower expression of myod, myogenin and car, indicating that myogenesis is halted by the amputation.
The observed signs of tail muscle dedifferentiation were unexpected since it was previously shown by Gargioli and colleagues that tail muscle fibres did not contribute to the regenerate . To confirm Gargioli's results, we returned to our inducible Cre transgenics ("CreER" and "Cre fragments", Figure 2) to follow labelled tail muscle during regeneration. As already stated, a common characteristic of the induced "Cre fragments" transgenics (and to a lesser extent in "CreER" transgenics) was that many of the labelled myofibres were concentrated in the trunk, close to the head and hindlimbs (Figure 2e'), while less labelling was found in the middle of the tail (Figure 2g) and little labelling was present close to the tip of the tail (Figure 2b, f). This allowed us to do two kinds of experiments. One was to amputate through the middle of the tail ("proximal amputations"; only in "Cre fragments" transgenics) and follow the overall changes of the group of labelled fibres during regeneration. The other experiment was to amputate closer to the tip, at around 2/3 of the tail ("distal amputations"; in both "CreER" and "Cre fragments" transgenics), and follow, in detail, individually labelled myofibres. The latter experiment is analogous to one performed by Echeverri et al. (2001), where they showed that axolotl tail myofibres fragment to proliferative mononuclear cells. Fibre fragmentation (or cellularization) and re-entry into the cell cycle are independent mechanisms expected to conclude the process of muscle dedifferentiation [5, 48].
Taking advantage of the low number of labelled myofibres in the distal part of the tail, we were able to follow individually labelled myofibres during regeneration. A similar experiment done by Echeverri et al. in the axolotl tail showed synchronous myofibre fragmentation a few days after the labelled muscle fibre was clipped by the amputation . In our hands, clipping the tip of a myofibre always led to its death (n = 14). On the contrary, amputations that did not directly touch the myofibres led to much higher fibre survival. A common characteristic of the surviving myofibres was that they frequently showed a compact or retracted shape at 1 dpa (n = 94, Figure 5c, d). In some situations, a slight retraction could already be observed a few minutes after amputation. Between two to four days post-amputation, these myofibres started to recover their size (Figure 5c, d) and sometimes they formed irregular cytoplasmatic projections (Figure 5d, arrowheads). By 12 days post-amputation, these myofibres had generally recovered their initial length (Figure 5c) or were even longer (Figure 5d). So, in contrast to what is described in the axolotl , we did not observe myofibre fragmentation in the tadpole tail.
Interestingly, different types of muscle fibres responded differently to amputation: "short" myofibres (around 2/3 the size of a myotome) were much more prone to retract than "long and thin" myofibres (length of a myotome). In fact, all the "short" fibres retracted after distal amputation (n = 83, with variable degrees), while only 11 out of 32 "long and thin" fibres slightly retracted after amputation. Therefore, not all the myofibres traced during regeneration showed an obvious retraction phenotype. In several cases, muscle fibres maintained their shape and size from the day of amputation till the end of observations and they generally belonged to three different groups: "long and thin" myofibres (n = 21, see example below); fibres from "proximal amputations" (n > 100, see below and Figure 5a, b); fibres far from the amputation plane (n = 7, not shown).
Secondly, retraction and dedifferentiation phenotypes were specific to one type of myofibres. Sasaki described that the tadpole tail has two types of muscle fibres: "red" fibres, with a small diameter and located externally, very close to the skin (Figure 7m, arrowheads); and "white" fibres, which are wider and located internally, below the red fibres (Figure 7m, arrows) . By shape and size comparison, we concluded that the "short" fibres observed in vivo (Figure 7k, fibres "a" and "c") are white (internal) fibres, while the "long and thin" (Figure 7k, fibre "b") are red (external) fibres. These myofibres behaved differently after distal amputation, since the short and internal myofibres always retracted after amputation (Figure 7k, l; compare size and shape of fibre "c" between 0 dpa and 3 dpa) and showed the dedifferentiation phenotype at 3 dpa (Figure 7n, arrows). In contrast, the long and thin myofibres, generally, did not contract (Figure 7k, l. Compare fibre "b" between 0 dpa and 3 dpa) and never showed the histological dedifferentiation phenotype after amputation (Figure 7n, arrowheads).
Finally, we also observed a relationship between retraction and dedifferentiation when we compared proximal and distal amputations. Although retraction was commonly observed after distal amputations, it was much less frequent and noticeable after proximal amputations (Figure 7o-q and Figure 5a, b). Accordingly, semithin sections revealed that myofibres frequently showed regular sarcomeric structure after proximal amputations (Figure 7s, t, arrowheads) with some myofibres showing very small regions of sarcomeric disorganisation (Figure 7s, t, arrows).
For the regeneration studies, we treated embryos with tamoxifen and amputated two week old larvae proximally to the base of the fin fold, removing about 1/5 of the tail musculature (Figure 8e, f). Six days after amputation, we could observe a small tail regenerate proximal to the regenerated caudal fin, generally smaller than the length of two myotomes, without mCherry labelling (Figure 8g, arrowhead). Although the new caudal fins continued to grow with time, the small tail regenerates stayed short in length and free of mCherry labelling (Figure 8h, arrowhead (14 dpa)). We further confirmed that the regenerated tail indeed contained new muscle (Figure 8i). The absence of mCherry labelling in the regenerate indicated that the new muscle did not derive from dedifferentiated stump fibres. Although the number of mCherry+ fibres stayed approximately the same during regeneration, we observed that de novo myogenesis occurring in the stump (due to the overall growth of the animal) was depositing new GFP+/mCherry- fibres next to the old mCherry+ ones. This led to a dispersion of mCherry+ fibres, resulting in stumps with many GFP+ fibres and a few mCherry+ fibres at 21-28 dpa, impeding clear and illustrative pictures at these later time points.
Our results indicate that skeletal muscle dedifferentiation is less common than previously believed. In both the Xenopus tadpole hindlimb and zebrafish larvae tail we found no evidence of myofibre dedifferentiation after amputation. In addition, we confirmed previous results showing that tadpole tail muscle did not contribute to the regenerated tissues, although we observed downregulation of muscle genes and sarcomeric disorganization in stump myofibres, features characteristic of the onset of dedifferentiation. Nevertheless, we did not observe myonuclei entering the S-phase of the cell cycle, nor myofibres undergoing fragmentation, and therefore consider that the dedifferentiation of tadpole tail muscle is incomplete. This incomplete dedifferentiation strongly suggests that tadpole satellite cells and other muscle progenitors are enough to form the regenerated muscle, and maybe, muscle progenitor cells in the salamanders are not as efficient or present in sufficient numbers, so that old myofibres have to fragment and contribute to the new muscle.
In vivo labelling of tadpole tail myofibres showed that a very common type of muscle fibres (white fibres) drastically retract their shape soon after amputation. During the following days we observed how these retracted myofibres regained their elongated shape, indicating that they would recover their function. Histological analysis of the same type of fibres evidenced the loss of shape and of sarcomeric striations (dedifferentiation) in the first days after amputation and the apparent recovery of the elongated shape and striations later on in the regenerative process. Although by histology alone we could not be sure that the dedifferentiated fibres would survive, our in vivo studies proved unambiguously that these fibres recovered from those initial drastic changes. Thus it seems that it is more profitable to the animal to recover these fibres rather than inducing their death, probably for energetic and/or timing reasons.
Despite muscle dedifferentiation in the tadpole tail seems to be fruitless, it could be necessary for muscle regeneration, for instance, for satellite cell activation as Morrison et al. suggested . However, dedifferentiation is almost absent after proximal amputations, indicating that it is not needed for regeneration or satellite cell activation, since proximal amputations also regenerate the muscle. The observation that dedifferentiation is rare after proximal amputations also indicates that the processes involved in the onset of regeneration, for example, bioelectric fields, coagulation, inflammation and signals from the wound epidermis [54–56], are not responsible for the observed muscle dedifferentiation. In fact, myofibre retraction is the only process found to be associated with the histological dedifferentiation phenotype.
Tadpole tail muscle dedifferentiation reaches its peak at 3 dpa, when sarcomeric loss is most intense and the expression of mature muscle genes has been reduced 2- to 5-fold. However, some retracted myofibres already show loss of sarcomeres at 1 dpa. This suggests that the mechanical pressure from tissue retraction can passively cause some disarrangement of myofibrils. Nevertheless, the observation of more frequent sarcomeric loss at 3 dpa together with downregulation of muscle genes, strongly indicates the presence of an active process responsible for the dedifferentiation phenotype. It is probable that the initial damage caused by retraction results in the activation of signalling pathways that lead to degradation of muscle proteins (see ) and to downregulation of muscle genes. Similar pathways might be present during muscle regeneration in urodeles, since myofibre damage was shown to be necessary for dedifferentiation in the axolotl . The reason why tadpole muscle fibres do not complete the dedifferentiation process might be due to the lack of some effectors or branches of these pathways, for example, the ones involved in cell cycle activation of the myonuclei.
The study of limb muscle regeneration was hampered by the inability to label muscle fibres with the inducible constructs, probably because ERT2-Cre-ERT2 induction and/or activity is very weak in the tadpole. Previous reports have shown that regular Cre recombinase is not able to efficiently tag every muscle fibre in the tadpole [8, 58] while ERT2-Cre-ERT2 appears to be three times less active than regular Cre , which explains, to some extent, our failure to label fibres efficiently. However, to exclude the possibility that the "Car-ERCreER/CALNL-GFP" construct had some intrinsic problems, we injected it in zebrafish eggs. After a short treatment with tamoxifen, we observed mosaic GFP expression in muscle fibres, indicating that the construct was working as expected (not shown). This led us to assume that the double ERT2 might be more stringent in tadpoles and/or that tamoxifen could not efficiently reach muscle fibres. In fact, we tried very long treatments with the highest tamoxifen concentrations we could, with no improvements. The use of "Cre fragments" transgenics allowed better labelling in the trunk and anterior tail but still no labelling was observed in the limbs, and very little in the posterior tail. Myogenesis in the limb and posterior tail is initiated later than in the anterior tail [58, 59], indicating that later born fibres are much more difficult to label. These difficulties prompted us to study hindlimb regeneration histologically, which revealed no signs of muscle dedifferentiation, contrary to what we observed after tadpole tail amputation. Gene expression analysis during limb regeneration denoted a possible delay of muscle growth after amputation, since the total amount of muscle did not change after three days of regeneration, while it roughly tripled during the same period when the limbs were not amputated. The intense myogenesis occurring in the limbs, could mask the gene downregulation from a possible dedifferentiation, however, we did not find signs of dedifferentiation through histological analysis.
The results obtained on skeletal muscle regeneration of zebrafish larvae were also surprising since several tissues in fish have been shown to regenerate by dedifferentiation, including cardiomyocytes [6, 40, 41, 50, 51]. We did not observe signs of muscle dedifferentiation after tail amputation, both by in vivo cell tracing and histological analysis, indicating that muscle dedifferentiation is less common than previously believed. However, working with larvae proved to be limiting in regards to obtaining illustrative pictures from late regeneration stages, since during larval growth, many new myofibres are deposited next to the fibres labelled before amputation, which resulted in a considerable dispersion of the labelled fibres. To solve this issue, juvenile or adult animals could be used, but ethical and technical restraints were prohibitive.
To clarify the strategy or mechanism of skeletal muscle regeneration in urodeles, similar inducible cell tracing experiments are needed to definitively confirm that stump myofibres contribute to the regenerated tissues. Future effort should also go into quantifying the contribution of satellite cells (or other muscle progenitors) versus dedifferentiated muscle fragments towards the new muscle. We believe that this contribution might vary between species and between developmental stages within the same species. For example, larval urodeles were shown to have satellite cells inside the myofibre basal lamina, like mammals and frogs, however, in adult urodeles, satellite cells are surrounded by their own basal laminae [7, 60] and this can result in satellite cells with different regeneration capabilities.
Cell tracing and/or histological studies did not reveal any signs of muscle dedifferentiation after tadpole limb or zebrafish tail amputation. However, we detected the unexpected presence of muscle dedifferentiation during tadpole tail regeneration. Nevertheless, dedifferentiation was incomplete since it did not result in myofibre fragmentation or cellularization, nor in cell cycle re-entry, which raises some doubts on the extent of the dedifferentiation phenotypes described histologically in other amphibians. Our results also highlight the importance of using in vivo tracing experiments in conjunction with histology to obtain clearer evidence on the events occurring during regeneration.
For muscle specific expression of GFP in tadpoles, we used the vector pCarGFP2 (Figure 1a), a kind gift from E. Amaya. For the tamoxifen-inducible expression of Cre (and GFP) in muscle cells, the Car-ERCreER/CALNL-GFP vector (Figure 2a) was built using the commercially available multisite Gateway system (Invitrogen), as described by Kwan et al. . Before that, a new destination vector containing I-SceI restriction sites flanking the att sites was made, for the easy removal of the vector backbone before transgenesis. For that the 1780 bp XhoI/ClaI fragment of pDestTol2pA2  was cloned into I-SceI-pBSII_SK + . To build the 5' entry clone (p5E_Car), the 3500 bp Asp718/SalI fragment from pCarGFP2 was cloned into p5E-MCS . To make the middle entry clone (pME_ERCreER-pA) the 3500 bp ERT2CreERT2-pA fragment was amplified from pCAG-ERT2CreERT2 vector (Addgene plasmid 13777)  with the primers 5'-GGGGACAAGTTTGTACAAAAAAGCAGGCTAGAATTCCCGGGTGAGCC-3' and 5'-GGGGACCACTTTGTACAAGAAAGCTGGGTAAGCTTGGGCTGCAGGTC-3' (vector sequences underlined). The 3' entry clone was initially made by amplification of the 4400 bp CAG-lox-neo-lox-GFP-pA fragment from pCALNL-GFP vector (Addgene plasmid 13770)  with the primers 5'-GGGGACAGCTTTCTTGTACAAAGTGGATTACGCCAAGCTT GGG C-3' and 5'-GGGGACAACTTTGTATAATAAAGTTGTTCCCCGAAAAGTGCCAC-3', but then the Rabbit globin poly(A) sequence was substituted by the SV40 poly(A) sequence. All the clones were confirmed by restriction mapping and sequencing.
For the Heat-shock-inducible expression of Cre in tadpole muscle cells, two different vectors were built (Figure 2d), both constructed with the Gateway system. One vector was the Car-nCre, where N-terminal Cre fragment was cloned under the control of Car promoter. This Cre fragment corresponds to the first 190 amino acids of Cre protein fused with the "N-peptide" used by Xu et al. . The corresponding 700 bp sequence was amplified using the template from pCAG-ERT2CreERT2 vector and the following mix of primers: 5'-GGGGACAAGTTTGTACAAAAAAGCAGGCTACCATGGCACCCAAGAAGAAGAG-3'; 5'-ATGGCACCCAAGAAGAAGAGGAAGGTCGACAATTTACTGACCGTACAC-3'; 5'-GGGGACCACTTTGTACAAGAAAGCTGGGTTCATTGAGCCAGCTCCTTCTTC-3'; 5'-ATTGAGCCAGCTCCTTCTTCAGAGCTTGGAGTTCCCACTTCAGCTGAGC-3'; 5'-GTTCCCACTTCAGCTGAGCCAGTTCCTTCTTATTAGCTTGGAGCTCCTTCTTCAG-3'; 5'-GCTTGGAGCTCCTTCTTCAGGGCACCAGAACCACCGTCAGTACGTGAGATATC-3'. The amplification product was then used to make the middle entry clone pME_nCre. Gateway LR reaction was made with p5E_Car, pME_nCre and p3E_polyA . The second vector was the Hsp-nlcCre, where C-terminal Cre fragment was cloned under the control of Hsp70 promoter [63, 64]. This Cre fragment corresponds to the last 154 amino acids of Cre protein fused to a nuclear localization signal and the "C-peptide" used by Xu et al. . The corresponding 650 bp sequence was amplified from pCAG-ERT2CreERT2 vector with the following mix of primers: 5'-GGGGACAAGTTTGTACAAAAAAGCAGGCTACCATGGCACCCAAGAAGAAGAG-3'; 5'-ATGGCACCCAAGAAGAAGAGGAAGGTGTCCGAACAACTGGAGAAGAAGCTCCAG-3'; 5'-CAACTGGAGAAGAAGCTCCAGGCTCTCGAAAAGAAGCTGGCTCAACTCGAATG-3'; 5'-AAGCTGGCTCAACTCGAATGGAAGAATCAAGCTCTGGAAAAGAAGCTCGCCCAAG-3'; 5'-GAAAAGAAGCTCGCCCAAGGCTCTGGTGGGAGAATGTTAATCCATATTG-3'; 5'-GGGGACCACTTTGTACAAGAAAGCTGGGTCTAATCGCCATCTTCCAGCAG-3'. The amplification product was used to make the middle entry clone pME_nlcCre. For the 5' entry clone (p5E_Hsp70), the Hsp70 promoter sequence was extracted from HGEM vector  with KpnI and BamHI and cloned it into p5E-MCS . Gateway LR reaction was made with p5E_Hsp70, pME_nlcCre, p3E_polyA  and the I-SceI destination vector.
For the tamoxifen-inducible expression of Cre in Zebrafish muscle fibres, the Tol2_Car-ERCreER vector was built using the Gateway system. The 5' entry clone used was p5E_Car (see above), while a new middle entry clone (pME_ERCreER, without poly(A)) was made from pCAG-ERT2CreERT2 vector. For this PCR we used the same Fwd primer as before and a new Rev: 5'-GGGGACCACTTTGTACAAGAAAGCTGGGTCCGCTATCAAGCTGTGGCAG-3'. The 3' entry clone (p3E_RgpA) was obtained by amplification of the 550 bp Rabbit beta-globin poly(A) sequence from pCAG-ERT2CreERT2 vector, with the primers 5'-GGGGACAGCTTTCTTGTACAAAGTGGCGCACTCCTCAGGTGCAG-3' and 5'-GGGGACAACTTTGTATAATAAAGTTGCAAGCTTGGGCTGCAGGT-3'. LR reaction was made with the pDestTol2pA2 destination vector.
Xenopus transgenesis was performed as described in Smith et al.  with the following modifications: egg collection was done right before mixing the sperm nuclei with the linearized DNA(s); eggs were dejellied in 2.5% L-cysteine hydrochloride in 1x MMR (no Ca2+) pH 8,5 (as in ), washed in 1x MMR (no Ca2+) + 0.5% BSA and plated with injection solution supplemented with 0.5% BSA; Sperm nuclei + DNA was diluted in 200 ul of MOH (as in ) before injection; 4 or more hours after injection, cleaving embryos were transferred to culture medium (0.3x MMR + 0.5% BSA + 0.05% gentamycin)  and incubated overnight at 17°C; after gastrulation, embryos were transferred to 0.1x MMR + 0.05% gentamycin.
The DNA(s) were prepared as follows: pCar-GFP was linearized with NotI; Car-ERCreER/CALNL-GFP was digested with I-SceI and separated from the backbone by gel electrophoresis; pCALNL-GFP was linearized with ScaI while Car-nCre and Hsp-nlcCre were digested with I-SceI and separated from the backbone by gel electrophoresis. Each DNA was used at a concentration ranging from 50 fmol to 200 fmol.
For zebrafish transgenesis, 2 ul of Tol2_Car-ERCreER DNA (50 ng/ul) was mixed with 2 ul of Tol2 transposase RNA (40 ng/ul) and injected into one-cell-stage embryos derived from the cross between a wildtype (AB Salk) female and a Tg(eab2:[EGFP-TmCherry]) male .
For the activation of tamoxifen-inducible Cre (ERT2CreERT2) in Xenopus tadpoles, we did daily intraperitoneal injections of 4-Hydroxytamoxifen (4-HT) during two weeks. 4-HT was dissolved in ethanol at a concentration of 50 mM or 10 mM and then freshly diluted 1/25 or 1/10 (to 2 mM) in water, before the injections. Injections were started when animals were 2 weeks old. For the activation of heat-shock-inducible Cre (nCre + nlcCre) in Xenopus tadpoles, we did daily heat-shocks for two weeks. Heat-shocks were done at 34°C for 20 minutes in tempered 0.1x MMR. Heat-shocks were initiated when tadpoles were between 10 and 20 days of age. Both 4-HT injected and heat-shocked animals had a resting period of 4 to 7 days before amputation.
For the activation of tamoxifen-inducible Cre in zebrafish larvae, we did treatments of 2 μM 4-HT in embryo medium  between 1 to 4 days post-fertilization.
For the detection of cycling nuclei, approximately 30 μl of BrdU (Sigma, 16880) dissolved in water at 2 μg/μl was injected intraperitoneally into stage 53 tadpoles 3 days after tail amputation. Samples were collected 3, 24 and 72 hours later.
For the detection of dying nuclei in vivo, we injected intraperitoneally approximately 30 μl of Propidium iodide (Invitrogen, P21493) dissolved in water at 1 μg/μl, into stage 56 tadpoles right after amputation, and observed the results 3 hours later.
In vivo cell tracing observations were done with Leica MZ16F Fluorescence Stereomicroscope equipped with FluoCombi III, which allows high resolution imaging. Before any manipulation, Xenopus tadpoles and zebrafish larvae were anesthetized in tricaine.
Before amputation, the animals were anesthetized in tricaine. Tadpole tail amputations for the cell tracing experiments were done at two levels: around 2/3 of the tail, depending on the position of the labelled myofibres, in what we called "distal amputations"; at the middle of the tail ("proximal amputations"). Animals were 4 to 6 weeks old (stage 53-56). Tail amputations for the Real Time PCRs were done exactly at 2/3 of the tail of stages 49, 50 and 54 tadpoles (10 tadpoles per time point and stage). For the histological observations, tails were amputated at 2/3 or at the middle of stage 53 or 56, respectively (3 tadpoles per time point and stage).
Tadpole hindlimb amputations were done at stage 54 through the middle of the zeugopod, for the Real Time PCRs (10 or 20 limbs per time point, in quadruplicate). For the histological observations, hindlimbs were amputated through the base of the autopod (3 limbs per time point).
Zebrafish tail amputations were done in two week old larvae, at the base of the caudal fin fold (4/5 the size of the tail, excluding the fin). After amputation, the animals were returned to system water.
The distal tips of Xenopus tail stumps (excluding the blastemas), measuring approximately 0,7 mm in length, were collected at 0 and 3 dpa for RNA extraction. Another region, also with 0,7 mm in length but starting approximately 1 mm from the amputation plane to avoid dead fibres, was also collected at 3 dpa. In the case of the hindlimbs, the remaining proximal half of the zeugopod was collected. Samples were generally kept in RNAlater Solution (Ambion) until use. Total RNA was extracted from tissue samples using TRIZOL® method according to the manufacturer's guidelines (Invitrogen) followed by DNaseI RNase-free treatment. RNA concentration and quality was measured using NanoDrop spectrophotometer (ND-1000). Between 250 to 1000 ng total RNA was used for reverse transcription with Cloned AMV First-Strand cDNA synthesis kit (Invitrogen), according to the manufacturer's guidelines. cDNA samples were generally diluted 1/200 and used fresh for Real Time PCR. 5 μl of diluted cDNA was mixed with 5 μl of Fwd and Rev primer mix (5 pmol per primer) and 10 μl of SYBR green (qPCR Master Mix, Invitrogen). Gene expression levels were measured with Applied Biosystems 7300 Real-Time PCR System and analysed using the ΔΔCt method, as previously described . Pairs of primers used: odc Fwd (5'-TCCATTGAGAGCGTAGGACTTG-3'); odc Rev (5'-GAGGCTCGCCGGTGAAATA-3'); myoD Fwd (5'-CAACCAAAGGCTCCCCAAA-3'); myoD Rev (5'-TGGAGGCTCTCTATGTAGCGAAT-3'); myogenin Fwd (5'-GGTATGCAAGAGGAAGACGGTTT-3'); myogenin Rev (5'-CGCTTTTCCCGCAAGGT-3'); car Fwd (5'-ACTATGTGTGACGACGAGGAGACTA-3'); car Rev (5'-CCAGCCCGGAGCCATT-3'); myh4 Fwd (5'-GTGCGTTGTTTGATTCCCAAT-3'); myh4 Rev (5'-GCTGGTGGATGAGGAGATGGT-3').
For ultrastructural analysis, tadpole tail samples were collected including at least 4 myotomes to avoid damaging distal muscle fibres, while limbs were collected at its proximal end. Zebrafish larvae were fixed complete. Samples were fixed in 2.5% glutaraldehyde (in 0.1 M Cacodylic buffer, pH 7.2, with sucrose) for 1 hour at 4°C with agitation, and then washed in Cacodylic buffer. Samples were then post-fixed with osmium tetroxide 2%. After dehydration, the samples were embedded with EPON, and frontal sections were made with an ultramicrotome. Semithin sections were stained with toulidine blue and observed with in an optical microscope (Leica DM6000). The ultrathin sections were counterstained with uranyl acetate and lead citrate and observed in a transmission electron microscope (Jeol 1011). At least three animal samples were observed for each time point: control (0 dpa), 1-6 dpa and 14 dpa.
Xenopus and zebrafish samples were collected as above, fixed in 4% paraformaldehyde (in PBS) for 2 h at 4°C with agitation and embedded in paraffin. Xenopus paraffin sections were 5 μm thick, while, due to the low number of mCherry+ fibres in zebrafish tails, we decided to make 10-30 μm thick sections. Sections were dewaxed and antigen retrieval was made only for Xenopus samples with Target Retrieval Solution, pH 9 (Dako) in a pressure cooker. The samples were permeabilized with triton X-100 (0.5%) and donkey serum (3%) in TBS. The incubation of the primary antibodies was done overnight at 4°C, and for the secondary antibodies 2 h at 37°C. Primary antibodies used were anti-alpha sarcomeric actin (Sigma, A2172) at 1/400, anti-Dystrophin (DSHB, MANDRA1 clone 7A10) at 1/3, anti-BrdU (Accurate Chemical, OBT0030) at 1/50, anti-Pax7 (R&D Systems, MAB1675) at 1/25, anti-PCNA (Sigma, P8825) at 1/500, anti-pHH3 (Millipore, 06-570) at 1/100 and anti-RFP (AbCam, ab34771) at 1/100. Confocal microscopy was performed with Leica SP5 or SPE confocals.
Xenopus tadpoles were raised in tanks with a recirculating water system (Aquatic Habitats) at 22 ± 1°C. Adult and juvenile zebrafish were also maintained in tanks with recirculating water at 28 ± 1°C.
All animal experiments were done with the approval of institutional (CEEA-PRBB-http://portal.prbb.org/ciencia/comite_etic) and governmental (Generalitat de Catalunya) ethics committees.
Green fluorescence protein
Days post amputation
Heat-shock inducible promoter
Myosin heavy chain 4
"Car-nCre + Hsp-nlcCre + CALNL-GFP"
Transmission electron microscope.
We thank Carme Fabregat, Lola Mulero, Cristina Pardo and Cristina Morera for technical assistance, Veronika Sander for critical revision of the manuscript and Chris Jopling for discussing ideas and sharing materials. The "MANDRA1 clone 7A10" monoclonal antibody developed by Glenn E. Morris was obtained from the Developmental Studies Hybridoma Bank developed under the auspices of the NICHD and maintained by The University of Iowa, Department of Biology, Iowa City, IA 52242. This work was partially supported by FCT grant reference number SFRH/BD/29865/2006 (AMCR). Work in the laboratory of JCIB was supported by MICINN, Fundacion Cellex, IPSEN Foundation, Sanofi-Aventis and the G. Harold and Leila Y. Mathers Charitable Foundation.
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